{"id":"W2086081694","doi":"10.1128/jcm.05880-11","title":"Validation of the MycAssay Pneumocystis Kit for Detection of Pneumocystis jirovecii in Bronchoalveolar Lavage Specimens by Comparison to a Laboratory Standard of Direct Immunofluorescence Microscopy, Real-Time PCR, or Conventional PCR","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hospital for Sick Children; University of Toronto; Public Health Ontario","funders":"Alere","keywords":"Pneumocystis jirovecii; Bronchoalveolar lavage; Pneumocystis pneumonia; Pneumocystis carinii; Pneumocystosis; Biology; Positive predicative value; Virology; Polymerase chain reaction; Gold standard (test); Real-time polymerase chain reaction; Molecular biology; Microbiology; Predictive value; Medicine; Human immunodeficiency virus (HIV); Lung; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0102981,0.001129521,0.000667469,0.001807694,0.0005018931,0.00137702,0.001364208,0.001622592,0.0007197034],"category_scores_gemma":[0.01683658,0.0007454451,0.000536575,0.0009154589,0.00131428,0.0007241781,0.000890233,0.0008572266,0.000936621],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005537843,"about_ca_system_score_gemma":0.0004888896,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001434509,"about_ca_topic_score_gemma":0.002658912,"domain_scores_codex":[0.9809141,0.006324194,0.002678285,0.00317173,0.006326248,0.000585382],"domain_scores_gemma":[0.9890088,0.004773027,0.001475608,0.001191759,0.003203372,0.0003474264],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000683411,0.0004237463,0.07924592,0.0003784368,0.0001187865,0.000202474,0.0004965322,0.0008484549,0.9036392,0.0002544443,0.0004435422,0.01326505],"study_design_scores_gemma":[0.0000941191,0.003353863,0.1501472,0.0002324501,0.0002273905,0.002718332,0.0002886688,0.01842396,0.8196362,0.0001706559,0.004614313,0.00009283426],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9204186,0.002646104,0.07008287,0.0003494376,0.0002719985,0.00090167,0.001727284,0.0007398821,0.002862132],"genre_scores_gemma":[0.9132686,0.0007269586,0.08074068,0.0003489223,0.00007437995,0.000789295,0.003084664,0.00009721154,0.0008693745],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0102981,"threshold_uncertainty_score":0.05446225,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02789931492563857,"score_gpt":0.3587345960898429,"score_spread":0.3308352811642044,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}