{"id":"W2086293112","doi":"10.1093/sysbio/syu070","title":"The Unsolved Challenge to Phylogenetic Correlation Tests for Categorical Characters","year":2014,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":510,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Boulevard; Columbia university; Biology; Archaeology; Biodiversity; Categorical variable; Geography; Ecology; Media studies; Sociology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003847169,0.0001251212,0.0001983932,0.00002876034,0.000189872,0.00002231904,0.0002282892,0.0001915374,0.000002724094],"category_scores_gemma":[0.0003896956,0.00008492258,0.00007846864,0.00005026238,0.00004745444,0.000001036997,0.00007772427,0.00004614918,0.00002764004],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009819432,"about_ca_system_score_gemma":0.00001829494,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004355939,"about_ca_topic_score_gemma":0.00002869628,"domain_scores_codex":[0.9990001,0.0002014395,0.0002648133,0.0002571977,0.00006022597,0.0002162699],"domain_scores_gemma":[0.9992285,0.0001136328,0.0001306184,0.0003505638,0.0001032859,0.00007333232],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009337913,0.0002568843,0.07408839,0.01306473,0.001166272,0.000001749859,0.003177351,0.005256886,0.6731465,0.2123799,0.004745353,0.01178223],"study_design_scores_gemma":[0.01533935,0.01908906,0.5399752,0.002030225,0.001738501,0.0003098308,0.004252311,0.03778873,0.0472214,0.1503643,0.1751913,0.006699738],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8641588,0.0005292782,0.1303665,0.001610928,0.001143009,0.001873733,0.00001628284,0.000022647,0.0002787558],"genre_scores_gemma":[0.9985398,0.0000106038,0.0005619938,0.0002901425,0.0002004656,0.0001211416,0.00008220651,0.000009406202,0.0001842636],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6259251,"threshold_uncertainty_score":0.3463042,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01853804765565262,"score_gpt":0.2615785351934117,"score_spread":0.2430404875377591,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}