{"id":"W2086387774","doi":"10.1371/journal.pone.0020338","title":"The Intestinal Microbiota Plays a Role in Salmonella-Induced Colitis Independent of Pathogen Colonization","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":178,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; University of British Columbia; Canadian Association of Gastroenterology; Crohn's and Colitis Foundation","keywords":"Colonisation resistance; Microbiology; Biology; Colitis; Salmonella enterica; Salmonella; Colonization; Enterocolitis; Pathogen; Lactobacillus; Antibiotics; Microbiome; Antibiotic resistance; Gut flora; Bacteria; Immunology; Genetics; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001963086,0.0005224895,0.0004065293,0.000457811,0.0001668759,0.0003431641,0.0001208619,0.0003843553,0.0008967509],"category_scores_gemma":[0.0002059037,0.0002441518,0.0003271165,0.0001790155,0.0003454585,0.0002225765,0.0002600885,0.0005904076,0.0001722733],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001426335,"about_ca_system_score_gemma":0.0001945809,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002138113,"about_ca_topic_score_gemma":0.0003452395,"domain_scores_codex":[0.9998112,0.00004502446,0.00001553092,0.00004002184,0.00003426352,0.00005407441],"domain_scores_gemma":[0.999577,0.00003364407,0.0001656683,0.00002723813,0.00002438864,0.0001720431],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007230239,0.000092487,0.002856535,0.00005815025,0.00001098248,0.0001351797,0.00002232402,0.00002872569,0.9946332,0.00003665547,0.0000177677,0.001384849],"study_design_scores_gemma":[0.0001778135,0.005957759,0.4498286,0.0001158095,0.0002853291,0.00280584,0.0002909308,0.00233369,0.5354819,0.0003192936,0.002368248,0.0000347997],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968942,0.001689166,0.0006456341,0.00009685375,0.00001457732,0.00001663362,0.00006894965,0.00004556576,0.0005283332],"genre_scores_gemma":[0.9971563,0.001102081,0.000905774,0.00006484183,0.00001680651,0.00001883835,0.0000912057,0.00001046805,0.0006338031],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008967509,"threshold_uncertainty_score":0.002999961,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03239305093048703,"score_gpt":0.2212799578796519,"score_spread":0.1888869069491649,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}