{"id":"W2086408840","doi":"10.1016/s1055-7903(03)00097-6","title":"Phylogenetic relationships among 28 spirotrichous ciliates documented by rDNA","year":2003,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Waterloo","funders":"National Institute of General Medical Sciences; Directorate for Biological Sciences; National Institutes of Health; National Science Foundation","keywords":"Biology; Phylogenetic tree; Phylogenetics; Ribosomal DNA; Maximum parsimony; Evolutionary biology; Taxonomy (biology); Sequence (biology); Concerted evolution; Phylogenetic network; Genetics; Botany; Clade; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002800162,0.0002754996,0.0001774918,0.00008480279,0.0003296575,0.00005398142,0.0001764573,0.0002966092,0.00001786688],"category_scores_gemma":[0.0001448589,0.0003106503,0.00009894462,0.0002183865,0.0002024254,0.000006056107,0.0001035151,0.0001707866,0.00001721995],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003672811,"about_ca_system_score_gemma":0.00005337393,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004801797,"about_ca_topic_score_gemma":0.00002794895,"domain_scores_codex":[0.9982927,0.0002721579,0.0002544546,0.000562981,0.0002130831,0.0004046078],"domain_scores_gemma":[0.9991674,0.00001274689,0.0001126616,0.0004038612,0.0001068061,0.0001964577],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002403279,0.00008261668,0.3584469,0.00001781614,0.00007634659,0.000005398534,0.00002341887,0.0002817541,0.6385241,0.001103177,0.001119819,0.0002946988],"study_design_scores_gemma":[0.00187628,0.000693943,0.4531545,0.00002428974,0.0001776688,0.00005062105,0.000116731,0.0003003222,0.5204095,0.00511558,0.0170693,0.001011344],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.971467,0.009592246,0.01696641,0.00004355393,0.0001131732,0.0003879521,0.00005281571,0.00002039377,0.001356405],"genre_scores_gemma":[0.9977018,0.0004079682,0.001051821,0.0001218694,0.00004359047,0.00003338798,0.000174294,0.00003336098,0.0004318931],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1181146,"threshold_uncertainty_score":0.9999346,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007301922780081407,"score_gpt":0.1950677645849381,"score_spread":0.1877658418048567,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}