{"id":"W2086501328","doi":"10.1089/aid.2008.0064","title":"Discrepancies in Assignment of Subtype/Recombinant Forms by Genotyping Programs for HIV Type 1 Drug Resistance Testing May Falsely Predict Superinfection","year":2008,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; McGill University; Jewish General Hospital","funders":"Canadian Institutes of Health Research; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Superinfection; Subtyping; Genotyping; Biology; Virology; Recombinant DNA; Drug resistance; Human immunodeficiency virus (HIV); Phylogenetic tree; Computational biology; Genetics; Virus; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008052323,0.0006530032,0.0004727571,0.002259531,0.0007645688,0.001207524,0.000852243,0.0008440409,0.0010191],"category_scores_gemma":[0.01999255,0.0002828252,0.000428016,0.001526285,0.0006842581,0.0009070681,0.0005623131,0.0007805493,0.0005320221],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004144508,"about_ca_system_score_gemma":0.0003769698,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001895638,"about_ca_topic_score_gemma":0.002667946,"domain_scores_codex":[0.9920993,0.003485611,0.001373768,0.0007846447,0.001827627,0.0004291062],"domain_scores_gemma":[0.9760064,0.01084629,0.006252524,0.003434011,0.002807363,0.0006534277],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009462154,0.0003298966,0.8715088,0.0001722539,0.00008039931,0.00232041,0.002215133,0.0009947177,0.04472281,0.0008698649,0.0009276074,0.0749118],"study_design_scores_gemma":[0.00006093514,0.001704479,0.7457264,0.0003606583,0.0003472418,0.02078941,0.004396442,0.02668206,0.1813751,0.003994897,0.01441511,0.0001473245],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9820865,0.0003584906,0.01362069,0.0003065044,0.00007757096,0.0001181616,0.0003567206,0.0001377295,0.002937514],"genre_scores_gemma":[0.9748967,0.0001502114,0.0237687,0.0003573632,0.00002213304,0.00003208371,0.0003897552,0.00005216135,0.0003309856],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008052323,"threshold_uncertainty_score":0.04258525,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08253013292022233,"score_gpt":0.3302854467976475,"score_spread":0.2477553138774252,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}