{"id":"W2086729134","doi":"10.1371/journal.pone.0009263","title":"HIV Drug Resistance Surveillance Using Pooled Pyrosequencing","year":2010,"lang":"en","type":"article","venue":"PLoS ONE","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Government of Canada","keywords":"Pyrosequencing; Sanger sequencing; Biology; Genetics; Population; Genotype; Amplicon; Drug resistance; Sequence analysis; Single-nucleotide polymorphism; Virology; Mutation; Gene; Polymerase chain reaction; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002131755,0.0006157787,0.0009453591,0.001904415,0.0002987598,0.0009873295,0.0008091303,0.0007333184,0.001181111],"category_scores_gemma":[0.002459654,0.0003911744,0.0006435997,0.0009978728,0.0002918969,0.0004902794,0.0007803891,0.0005727783,0.0006937443],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002589172,"about_ca_system_score_gemma":0.0002667369,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004268204,"about_ca_topic_score_gemma":0.0007893919,"domain_scores_codex":[0.9975789,0.0003976036,0.0001418776,0.0008294875,0.000965456,0.00008676013],"domain_scores_gemma":[0.9987771,0.0003046831,0.0003066671,0.000175114,0.000371068,0.00006523607],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009689834,0.0002867026,0.04058177,0.0004618612,0.0004035389,0.0003219901,0.0002363018,0.003795359,0.8422791,0.0001884487,0.0006214812,0.1098544],"study_design_scores_gemma":[0.0001015244,0.002768868,0.1210398,0.0001687556,0.000836242,0.00406216,0.0001565636,0.04455012,0.8159251,0.001255165,0.009003439,0.0001323309],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8653527,0.005273819,0.1203315,0.0001432051,0.00008404804,0.000441358,0.003405025,0.001100299,0.003868043],"genre_scores_gemma":[0.8699681,0.001292375,0.1228694,0.0002334511,0.0000856121,0.0002388298,0.003775206,0.00008179992,0.001455213],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002131755,"threshold_uncertainty_score":0.01127398,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03155281199217719,"score_gpt":0.2419810803593201,"score_spread":0.210428268367143,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}