{"id":"W2086888347","doi":"10.1016/j.protis.2007.12.001","title":"Sampling Gene Diversity Across the Supergroup Amoebozoa: Large EST Data Sets from Acanthamoeba castellanii, Hartmannella vermiformis, Physarum polycephalum, Hyperamoeba dachnaya and Hyperamoeba sp.","year":2008,"lang":"en","type":"article","venue":"Protist","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":false,"ca_institutions":"Dalhousie University","funders":"Genome Atlantic; Canada Research Chairs","keywords":"Biology; Acanthamoeba; Dictyostelium discoideum; Genome; Dictyostelium; Phylogenetics; Horizontal gene transfer; Gene; Evolutionary biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0003990337,0.0004423498,0.0003763025,0.00002919238,0.002385688,0.0001245825,0.001457944,0.000314209,0.0000704073],"category_scores_gemma":[0.0000852582,0.000393357,0.0001202237,0.0001369711,0.0005264958,0.00004979713,0.004873442,0.0003763897,0.00006784743],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004257251,"about_ca_system_score_gemma":0.0001164074,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002475345,"about_ca_topic_score_gemma":0.001375787,"domain_scores_codex":[0.9972545,0.0001301175,0.0003035905,0.001129617,0.0003608942,0.0008212927],"domain_scores_gemma":[0.9979615,0.00005485966,0.0001411879,0.001486754,0.00009915005,0.000256579],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006825411,0.0005686713,0.8773688,0.0001126465,0.000606262,0.0004049055,0.002821032,0.00002267006,0.1007258,0.00007526494,0.01101855,0.005592891],"study_design_scores_gemma":[0.006278108,0.0006396104,0.7723535,0.00008773875,0.0003140814,0.00155074,0.001792343,0.0009142309,0.06946425,0.0002688544,0.1440023,0.002334181],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9887346,0.00301767,0.0003993155,0.0002529022,0.0004439114,0.0006776598,0.006031116,0.00004826945,0.0003945813],"genre_scores_gemma":[0.9925841,0.001272707,0.0007985532,0.0006432821,0.0006645245,0.00002190206,0.003551571,0.00004583724,0.0004175389],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1329838,"threshold_uncertainty_score":0.9998518,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05146101786469173,"score_gpt":0.2771543601033918,"score_spread":0.2256933422387001,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}