{"id":"W2086888347","doi":"10.1016/j.protis.2007.12.001","title":"Sampling Gene Diversity Across the Supergroup Amoebozoa: Large EST Data Sets from Acanthamoeba castellanii, Hartmannella vermiformis, Physarum polycephalum, Hyperamoeba dachnaya and Hyperamoeba sp.","year":2008,"lang":"en","type":"article","venue":"Protist","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":false,"ca_institutions":"Dalhousie University","funders":"Genome Atlantic; Canada Research Chairs","keywords":"Biology; Acanthamoeba; Dictyostelium discoideum; Genome; Dictyostelium; Phylogenetics; Horizontal gene transfer; Gene; Evolutionary biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004813915,0.000297756,0.0004630448,0.001141685,0.0005692366,0.0005732201,0.0002107657,0.0005481777,0.0005703418],"category_scores_gemma":[0.001329141,0.0002545903,0.0004040514,0.001239276,0.0003653024,0.000319683,0.0007089894,0.0004878622,0.0002788872],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002424759,"about_ca_system_score_gemma":0.0002471565,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002364421,"about_ca_topic_score_gemma":0.007345896,"domain_scores_codex":[0.9996542,0.00006349365,0.0000199816,0.0001321305,0.0000739016,0.00005633972],"domain_scores_gemma":[0.9987776,0.0006316385,0.0001378777,0.0001504493,0.000160507,0.0001419941],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009506198,0.0001582027,0.1935318,0.0002894618,0.0004080976,0.0003603211,0.001380985,0.002989129,0.7738799,0.000458231,0.0004160089,0.02517719],"study_design_scores_gemma":[0.00004863922,0.00009685286,0.9749808,0.00002375526,0.0001730687,0.0005132579,0.0005915237,0.004957694,0.01464384,0.0004837247,0.003464571,0.00002227688],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996613,0.0001785582,0.0009565439,0.00001907613,0.00000263704,0.000005457704,0.001978406,0.00001788775,0.0002284786],"genre_scores_gemma":[0.9816439,0.0002101508,0.003891862,0.0000474021,0.000009980198,0.0000328459,0.01384882,0.00002247959,0.0002926357],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002364421,"threshold_uncertainty_score":0.004701257,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05146101786469173,"score_gpt":0.2771543601033918,"score_spread":0.2256933422387001,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}