{"id":"W2087288699","doi":"10.1093/molbev/msk015","title":"Transposon-Mediated Expansion and Diversification of a Family of ULP-like Genes","year":2006,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":84,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Pseudogene; Gene; Transposable element; Genetics; Genome; Arabidopsis; Negative selection; Retrotransposon; Noncoding DNA; Transposase; Histone; Epigenetics; Gene family; Mutant","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000517457,0.00004886135,0.00008140667,0.00001134937,0.00005431248,0.00000170967,0.00003106477,0.00008446199,0.00000729868],"category_scores_gemma":[0.000005740588,0.00002294225,0.00002367542,0.00009863567,0.00009341355,0.00001742635,0.00001292631,0.00001972868,6.197675e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003539792,"about_ca_system_score_gemma":0.000003545648,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005769011,"about_ca_topic_score_gemma":0.0001193284,"domain_scores_codex":[0.9996213,0.00004282305,0.0001157214,0.0001188744,0.00003499205,0.00006632537],"domain_scores_gemma":[0.99984,0.00002983508,0.00005328211,0.00002215931,0.00003811353,0.0000166436],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001439523,0.00002859915,0.05667074,0.00000446079,0.000004546402,1.688515e-7,0.00001667575,0.000004728501,0.9378153,0.001848356,0.000003986712,0.003588051],"study_design_scores_gemma":[0.000143329,0.0001711564,0.966776,0.000006654834,0.00001724829,0.000001866933,0.00005612037,0.0001777814,0.02833473,0.004028782,0.0002334898,0.00005279537],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969193,0.002078378,0.0005980033,0.0001870548,0.00002670192,0.00007176954,0.00005280997,0.00000792044,0.0000581092],"genre_scores_gemma":[0.9995191,0.0001232442,0.0001614254,0.00001434335,0.00001514,0.000002768068,0.0001564144,2.693955e-7,0.000007338185],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9101053,"threshold_uncertainty_score":0.09355577,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008109985942498206,"score_gpt":0.2001744791885511,"score_spread":0.1920644932460529,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}