{"id":"W2087369214","doi":"10.1016/j.ydbio.2005.10.004","title":"Identification of a BMP inhibitor-responsive promoter module required for expression of the early neural gene zic1","year":2005,"lang":"en","type":"article","venue":"Developmental Biology","topic":"Developmental Biology and Gene Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Eunice Kennedy Shriver National Institute of Child Health and Human Development; Regeneron Pharmaceuticals","keywords":"Biology; Xenopus; Transcription factor; Bone morphogenetic protein; Cell biology; Gene; Gastrulation; Transcription (linguistics); Genetics; Computational biology; Embryogenesis","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002287434,0.0001340784,0.0001581875,0.00004983132,0.00008804067,0.000003474898,0.000209326,0.0002251292,0.000008644335],"category_scores_gemma":[0.00008279091,0.00009990018,0.00009084551,0.00008780002,0.0002006659,0.000008403386,0.0001642258,0.00004183601,0.000004704144],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002625413,"about_ca_system_score_gemma":0.0000897003,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003164283,"about_ca_topic_score_gemma":0.0000104798,"domain_scores_codex":[0.9989019,0.0000976658,0.0004533647,0.0003021543,0.00006584961,0.0001790365],"domain_scores_gemma":[0.9993786,0.0000177837,0.000270966,0.0001881225,0.0001161859,0.00002833043],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003060514,0.0000509405,0.009903602,0.00001174592,0.00003004457,5.982825e-8,0.000163766,0.00001175284,0.9817442,0.00003570439,0.0001955138,0.007546646],"study_design_scores_gemma":[0.0005219717,0.0001433424,0.06545421,0.00001057475,0.000007198563,0.00001005402,0.00003004569,0.0000277646,0.9312198,0.000112124,0.002348285,0.0001146439],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980102,0.000158699,0.0007875304,0.0001960777,0.0002354514,0.0004833329,0.00007300367,0.000006014989,0.00004966296],"genre_scores_gemma":[0.99483,0.00001205475,0.003999896,0.00009299113,0.00008544474,0.00007014746,0.0003088347,0.00001099287,0.0005896934],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05555061,"threshold_uncertainty_score":0.4073811,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01039956364893352,"score_gpt":0.2504721783993233,"score_spread":0.2400726147503898,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}