{"id":"W2087577359","doi":"10.1128/jcm.02164-14","title":"Clinical Laboratory Response to a Mock Outbreak of Invasive Bacterial Infections: a Preparedness Study","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; University of Toronto","funders":"Centers for Disease Control and Prevention","keywords":"Outbreak; Virulence; Biology; Genome; Whole genome sequencing; Transcriptome; Transmission (telecommunications); Genetics; Computational biology; Gene; Virology; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005327289,0.0006984543,0.000545008,0.0002917587,0.0007259121,0.0007948607,0.0006932872,0.001509816,0.001068674],"category_scores_gemma":[0.01237238,0.0003187076,0.0004665345,0.0002051995,0.0007059096,0.0009060951,0.001431345,0.0009862004,0.0003106004],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008256005,"about_ca_system_score_gemma":0.0009564707,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006353193,"about_ca_topic_score_gemma":0.0007826388,"domain_scores_codex":[0.9965349,0.002214328,0.0002069059,0.0003806863,0.0003796883,0.0002833884],"domain_scores_gemma":[0.9937581,0.002095395,0.001159986,0.001065367,0.0009283248,0.0009929182],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.04423666,0.100349,0.4977537,0.001088781,0.0006446871,0.007523777,0.009451944,0.01528875,0.2291835,0.001779178,0.004812752,0.08788724],"study_design_scores_gemma":[0.002328498,0.4562336,0.4404562,0.0001256625,0.0002314992,0.002786878,0.01094007,0.01839351,0.05892051,0.001482536,0.007806196,0.0002948758],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979163,0.00002542,0.0008719872,0.0001483064,0.00001516323,0.0005267914,0.00005479352,0.00001966063,0.0004216217],"genre_scores_gemma":[0.995672,0.00005176267,0.002703014,0.0003698378,0.00004019978,0.0006891344,0.0002097686,0.000006054795,0.000258299],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005327289,"threshold_uncertainty_score":0.02817369,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05052181363337676,"score_gpt":0.4309051612346825,"score_spread":0.3803833476013058,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}