{"id":"W2087937056","doi":"10.1186/1471-2105-10-287","title":"Epitopia: a web-server for predicting B-cell epitopes","year":2009,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":232,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Tel Aviv University; Killam Trusts","keywords":"Epitope; Computer science; Web server; Web application; Interface (matter); Sequence (biology); Computational biology; Graphical user interface; Data mining; Bioinformatics; Antigen; Biology; The Internet; Operating system; Immunology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007680455,0.001451948,0.0009198183,0.001358345,0.0005341666,0.000967026,0.002013798,0.001081928,0.03162585],"category_scores_gemma":[0.002708504,0.0006411271,0.0006786961,0.001099907,0.0002674336,0.001893226,0.001081241,0.001100423,0.01898587],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004885852,"about_ca_system_score_gemma":0.001063125,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002837897,"about_ca_topic_score_gemma":0.002494576,"domain_scores_codex":[0.9997129,0.00005193856,0.00003113609,0.00005988831,0.0001055698,0.00003860129],"domain_scores_gemma":[0.9993061,0.0002788995,0.00006650505,0.00007652984,0.0001574822,0.0001144768],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00648655,0.0004299248,0.007788912,0.002918826,0.0003657747,0.001928761,0.0003043015,0.01829922,0.07846796,0.007403496,0.5919305,0.2836758],"study_design_scores_gemma":[0.002290851,0.0008185997,0.02578714,0.0006441979,0.0003378753,0.003892043,0.0002702353,0.3863706,0.1068563,0.01915636,0.4530917,0.0004840117],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"software","genre_gemma":"methods","genre_scores_codex":[0.07762764,0.005805463,0.3053122,0.001181471,0.0005716087,0.001112919,0.1702604,0.4052571,0.0328711],"genre_scores_gemma":[0.1869921,0.002664834,0.378392,0.0006146423,0.0002586309,0.001401507,0.3794779,0.01770668,0.03249175],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.03162585,"threshold_uncertainty_score":0.105799,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01522111856171145,"score_gpt":0.2332089179338898,"score_spread":0.2179877993721783,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}