{"id":"W2088221752","doi":"10.1038/sj.emboj.7601087","title":"Definition of the bacterial N‐glycosylation site consensus sequence","year":2006,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":350,"is_retracted":false,"has_abstract":false,"ca_institutions":"Institute for Biological Sciences","funders":"Functional Genomics Center Zurich; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Biology; Consensus sequence; Glycosylation; Sequence (biology); Computational biology; Bacterial protein; Genetics; Peptide sequence; Sequence alignment; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004006917,0.00006658719,0.00006112922,0.00002309208,0.0002137085,0.00003736713,0.0001743242,0.00005052938,0.0001085225],"category_scores_gemma":[0.0001068711,0.00003790721,0.00008297042,0.00008875601,0.0001255296,0.000002883595,0.00005376927,0.0001482122,0.00001376136],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001429181,"about_ca_system_score_gemma":0.0001047125,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006044288,"about_ca_topic_score_gemma":0.00006475498,"domain_scores_codex":[0.9991716,0.0001843034,0.0002033445,0.00008276578,0.0002203443,0.0001376206],"domain_scores_gemma":[0.9994364,0.0000189956,0.0001526258,0.000204156,0.0001613566,0.00002647428],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001133352,0.00001843824,0.001316455,0.000003317472,0.000009732125,0.000001673841,0.00001989272,0.0001189782,0.9954153,0.0009958295,0.001565117,0.0004218978],"study_design_scores_gemma":[0.001505207,0.0002401954,0.05365551,0.0000417706,0.00003039694,0.0008865938,0.00005240506,0.0002832952,0.8995405,0.01632627,0.02724194,0.0001958884],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941875,0.0001040248,0.0002811697,0.0008963739,0.0001942158,0.0001177319,0.00001752079,0.000002713388,0.004198769],"genre_scores_gemma":[0.9987375,0.00002690778,0.0003504772,0.00006218031,0.000477746,0.000002670858,0.00002496405,0.000007267302,0.0003103519],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0958748,"threshold_uncertainty_score":0.1643695,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02568403428997034,"score_gpt":0.2684488093606928,"score_spread":0.2427647750707224,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}