{"id":"W2088258525","doi":"10.1371/journal.pone.0008094","title":"The Association of Virulence Factors with Genomic Islands","year":2009,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":151,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"SFU Community Trust Endowment Fund; Simon Fraser University; Genome British Columbia; Canadian Institutes of Health Research; Genome Canada; Cystic Fibrosis Foundation; Michael Smith Health Research BC; Los Alamos National Laboratory; International Business Machines Corporation","keywords":"Virulence; Biology; Genome; Pathogenicity island; Genetics; CRISPR; Gene; Pathogen; Virulence factor","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003229429,0.0003855237,0.0004215814,0.001270735,0.0003478581,0.0006588237,0.0003052142,0.0004223349,0.002213004],"category_scores_gemma":[0.00164257,0.0001712638,0.000411328,0.001354053,0.0003620919,0.000368263,0.0007298152,0.0006181841,0.0004200271],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003705547,"about_ca_system_score_gemma":0.000334703,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001518726,"about_ca_topic_score_gemma":0.001292976,"domain_scores_codex":[0.9995598,0.00003552323,0.00003483777,0.0001870896,0.0001080877,0.00007466791],"domain_scores_gemma":[0.9978831,0.0006735206,0.0007541458,0.0001659769,0.0002841877,0.000238921],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007208296,0.0001067493,0.4199498,0.001413487,0.0005920021,0.0005505566,0.0003562642,0.001991883,0.5366117,0.0008123913,0.0008471147,0.03604726],"study_design_scores_gemma":[0.00001479578,0.0001957406,0.9532926,0.0000746822,0.0002671989,0.001352134,0.0002868822,0.003994651,0.03401463,0.0009445677,0.005528017,0.00003420857],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893533,0.002778965,0.004445489,0.00009587054,0.00001120207,0.00002425846,0.002073911,0.0001496567,0.001067381],"genre_scores_gemma":[0.9919099,0.0005932164,0.00356266,0.00006330109,0.00001194211,0.00002079929,0.00339572,0.00003184412,0.0004106164],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002213004,"threshold_uncertainty_score":0.007403255,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0168725158021353,"score_gpt":0.230455235635277,"score_spread":0.2135827198331417,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}