{"id":"W2088281292","doi":"10.1097/qai.0b013e318183a905","title":"Genotyping of Human Papillomavirus DNA in Anal Biopsies and Anal Swabs Collected From HIV-Seropositive Men With Anal Dysplasia","year":2008,"lang":"en","type":"article","venue":"JAIDS Journal of Acquired Immune Deficiency Syndromes","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; McGill University; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Anal cancer; Medicine; Genotyping; Odds ratio; Biopsy; Genotype; Dysplasia; Confidence interval; Squamous intraepithelial lesion; Gastroenterology; Internal medicine; Men who have sex with men; HPV infection; Gynecology; Human papillomavirus; Virology; Human immunodeficiency virus (HIV); Cervical intraepithelial neoplasia; Cancer; Cervical cancer; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005700687,0.0002787385,0.001147792,0.001149358,0.0002660161,0.00003623005,0.000279965,0.0001323699,0.0004521267],"category_scores_gemma":[0.0001646582,0.0002098436,0.0001789177,0.001737304,0.0007062015,0.0002984012,0.0001046026,0.0003129617,0.000005067561],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000226187,"about_ca_system_score_gemma":0.0004825557,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001020217,"about_ca_topic_score_gemma":0.0001055854,"domain_scores_codex":[0.9969347,0.0001658056,0.001087349,0.0003165063,0.0009863419,0.0005092653],"domain_scores_gemma":[0.9982139,0.0002325998,0.0004680342,0.0002687073,0.0005957528,0.0002210181],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.008103394,0.001108681,0.6482645,0.000323493,0.001080513,0.004541511,0.006884897,0.000104,0.3244541,0.00009963293,0.0003979239,0.004637351],"study_design_scores_gemma":[0.005337467,0.003498571,0.9703706,0.0003310496,0.0001809442,0.001802064,0.002409931,0.0002833066,0.01546785,0.00008965399,0.00001185426,0.0002166966],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9911087,0.006276274,0.00005881633,0.0001884574,0.00005043155,0.000253865,0.00004504502,0.00001658937,0.002001873],"genre_scores_gemma":[0.9980571,0.0009836865,0.0005890544,0.00002484645,0.00005606677,0.000004946834,0.00002525503,0.0000349244,0.0002240854],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3221061,"threshold_uncertainty_score":0.8557175,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02408175471789739,"score_gpt":0.286676840909655,"score_spread":0.2625950861917576,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}