{"id":"W2088339057","doi":"10.1073/pnas.1316901111","title":"PhoPQ regulates acidic glycerophospholipid content of the <i>Salmonella</i> Typhimurium outer membrane","year":2014,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":173,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Glycerophospholipid; Bacterial outer membrane; Lipopolysaccharide; Bacteria; Microbiology; Glycerophospholipids; Salmonella; Chemistry; Antimicrobial; Enzyme; Lipid A; Biochemistry; Membrane; Biology; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001393844,0.0004156065,0.000137621,0.00017246,0.0001341339,0.0003723403,0.0001540577,0.000259517,0.0009133719],"category_scores_gemma":[0.0001740119,0.0001390321,0.0002062328,0.00006787108,0.0002848895,0.0001622367,0.0002650559,0.0004398475,0.0003907614],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004440304,"about_ca_system_score_gemma":0.0001669456,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00111287,"about_ca_topic_score_gemma":0.001253048,"domain_scores_codex":[0.9998372,0.00003176759,0.00001463364,0.00003544924,0.00003707492,0.00004382],"domain_scores_gemma":[0.9997981,0.00002767018,0.00006484673,0.00001588021,0.00003177298,0.0000617316],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005985772,0.00001288699,0.0002088977,0.000009187203,0.000001361961,0.00001897001,0.000007113979,0.00001965663,0.9994081,0.00002198205,0.00002380959,0.000208217],"study_design_scores_gemma":[0.00002634822,0.0002214619,0.02555537,0.000008576411,0.00001360411,0.0001148689,0.00009462253,0.001491879,0.9712805,0.00005731117,0.001125801,0.000009633224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976891,0.000270851,0.0008323797,0.0001284336,0.00001673502,0.00001174453,0.0002275686,0.00007726317,0.000745885],"genre_scores_gemma":[0.9979469,0.00014465,0.0005830252,0.00009285489,0.000004615532,0.00001476259,0.0002524015,0.00003022194,0.0009305475],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00111287,"threshold_uncertainty_score":0.003221631,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0540411958705229,"score_gpt":0.2523266967711545,"score_spread":0.1982855009006316,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}