{"id":"W2088586122","doi":"10.1089/cmb.2008.0118","title":"Descendants of Whole Genome Duplication within Gene Order Phylogeny","year":2008,"lang":"en","type":"article","venue":"Journal of Computational Biology","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Genome; Phylogenetics; Gene duplication; Biology; Evolutionary biology; Genomics; Genetic algorithm; Genetics; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002234267,0.00009813076,0.000194006,0.0001062705,0.00004727732,0.000002920404,0.0001862729,0.00009828921,0.00001791982],"category_scores_gemma":[0.00006167545,0.00008651284,0.00008753191,0.0001193179,0.0001289928,0.00000446488,0.00004516363,0.00007768886,0.000009225059],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001590641,"about_ca_system_score_gemma":0.0001970586,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001986366,"about_ca_topic_score_gemma":7.996115e-7,"domain_scores_codex":[0.999078,0.00006962397,0.000464849,0.0001349608,0.0001305282,0.0001220386],"domain_scores_gemma":[0.9986845,0.00002017487,0.0004980531,0.0001085071,0.0006321704,0.00005654987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007296766,0.00009469246,0.006123426,0.0000066182,0.0001313719,0.000004550567,0.00007510553,0.01661963,0.9760627,0.00007663365,0.0001589016,0.0005734541],"study_design_scores_gemma":[0.006551888,0.0046668,0.5776438,0.00003422379,0.0001360221,0.003638906,0.0001410845,0.00252273,0.3595146,0.009118296,0.03520739,0.0008242955],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9484831,0.0008941445,0.0501471,0.000149349,0.0001457397,0.00007755645,0.00003116006,0.000002203268,0.00006963125],"genre_scores_gemma":[0.9612762,0.0001239194,0.03798792,0.0001062143,0.0002527341,0.000001808151,0.0001727602,0.0000104738,0.00006792694],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6165481,"threshold_uncertainty_score":0.3527891,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01630623563902214,"score_gpt":0.2577301740039923,"score_spread":0.2414239383649701,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}