{"id":"W2088586122","doi":"10.1089/cmb.2008.0118","title":"Descendants of Whole Genome Duplication within Gene Order Phylogeny","year":2008,"lang":"en","type":"article","venue":"Journal of Computational Biology","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Genome; Phylogenetics; Gene duplication; Biology; Evolutionary biology; Genomics; Genetic algorithm; Genetics; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009472804,0.0002102304,0.0004574431,0.000772575,0.0005279145,0.0009170889,0.000608918,0.0003286294,0.001901735],"category_scores_gemma":[0.002761378,0.000277806,0.0005676695,0.0007343545,0.0004278779,0.0006897476,0.0008273129,0.0006689312,0.0003011844],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005354217,"about_ca_system_score_gemma":0.0005542651,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001183739,"about_ca_topic_score_gemma":0.003023773,"domain_scores_codex":[0.9997262,0.00005232984,0.00001434233,0.0001242139,0.00005510985,0.00002789647],"domain_scores_gemma":[0.9993712,0.0003016766,0.0000795083,0.000134098,0.00006163173,0.00005192437],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0009177609,0.0001438753,0.1674248,0.0004380567,0.0003754029,0.001130171,0.001215677,0.2676323,0.07777432,0.1518819,0.002205221,0.3288604],"study_design_scores_gemma":[0.00006138566,0.000205277,0.05434635,0.00006156447,0.0001422337,0.001763014,0.0006289084,0.7841231,0.03275986,0.11256,0.01329424,0.00005420056],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7186205,0.0003277871,0.2770245,0.0001712639,0.00001928151,0.00004037046,0.0003586262,0.000478969,0.002958624],"genre_scores_gemma":[0.8622728,0.0001692973,0.1334881,0.00005194734,0.0000117076,0.00003761526,0.001483656,0.0001068814,0.002377954],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001901735,"threshold_uncertainty_score":0.006361961,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01630623563902214,"score_gpt":0.2577301740039923,"score_spread":0.2414239383649701,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}