{"id":"W2089162816","doi":"10.1038/sj.ejhg.5201612","title":"Haplotype-based association analysis of 56 functional candidate genes in the IBD6 locus on chromosome 19","year":2006,"lang":"en","type":"article","venue":"European Journal of Human Genetics","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":false,"ca_institutions":"Montreal Heart Institute; Université de Montréal; Université de Sherbrooke; McGill University Health Centre","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health; Broad Institute; Crohn's and Colitis Foundation; Crohn's and Colitis Foundation of America; Eli and Edythe Broad Foundation","keywords":"Candidate gene; Haplotype; Single-nucleotide polymorphism; Genetics; Biology; Nonsynonymous substitution; Locus (genetics); Genetic association; Genome-wide association study; Allele; Imputation (statistics); Linkage disequilibrium; Gene; Genome; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009040376,0.0001188247,0.0001571735,0.0002117467,0.00006817863,0.00002652637,0.0002493061,0.00003698573,0.00004036276],"category_scores_gemma":[0.00004740912,0.00009472499,0.0002565234,0.0001810209,0.00004549065,0.000002928624,0.00002441613,0.0001127437,0.000006430068],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004861323,"about_ca_system_score_gemma":0.00008677198,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005574873,"about_ca_topic_score_gemma":0.0001154176,"domain_scores_codex":[0.9983624,0.0005242971,0.0004887618,0.0001304335,0.0003482728,0.0001458913],"domain_scores_gemma":[0.9989594,0.00002175413,0.0005404014,0.0002449172,0.0001871113,0.00004642789],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005979717,0.0006352207,0.3833167,0.00003639851,0.001231044,0.0006539777,0.0001608304,0.2455798,0.3522565,0.0001253246,0.01462585,0.0007803625],"study_design_scores_gemma":[0.001073313,0.0004009736,0.979261,0.00001308952,0.0004830635,0.000004222868,0.00002818874,0.0001701987,0.01323552,0.0000213308,0.005171131,0.0001379105],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997879,0.000479053,0.0002329893,0.00006788109,0.00008615758,0.00006047383,0.00003435215,0.000002240468,0.00115782],"genre_scores_gemma":[0.9989474,0.00002339014,0.00007477476,0.0002238845,0.0004673307,7.374679e-7,0.0001103439,0.0000196211,0.0001325482],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5959444,"threshold_uncertainty_score":0.3862773,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00966049963231613,"score_gpt":0.22561922171478,"score_spread":0.2159587220824639,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}