{"id":"W2089199521","doi":"10.1111/j.1399-3054.2011.01536.x","title":"N‐ and C‐terminal degradomics: new approaches to reveal biological roles for plant proteases from substrate identification","year":2011,"lang":"en","type":"review","venue":"Physiologia Plantarum","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Deutscher Akademischer Austauschdienst; Michael Smith Health Research BC","keywords":"Proteases; Protease; Proteolysis; Biology; Proteomics; Cleavage (geology); Biochemistry; Computational biology; Cell biology; Enzyme; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009880721,0.0005304474,0.001126626,0.0000623139,0.0001502753,0.00005823862,0.0005494468,0.0004940983,0.00002588778],"category_scores_gemma":[0.00004175861,0.0003964564,0.0002423967,0.00007016112,0.00008916406,0.00006376741,0.0001652365,0.0003434482,0.0000260295],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006121478,"about_ca_system_score_gemma":0.0001024441,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001131305,"about_ca_topic_score_gemma":0.00001057734,"domain_scores_codex":[0.99795,0.0000337963,0.0006327826,0.00094272,0.00006271128,0.0003779792],"domain_scores_gemma":[0.9985075,0.0002384067,0.000523142,0.0005264292,0.00001446041,0.0001900499],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005226315,0.000236914,0.00004916264,0.006284405,0.0002950606,0.000007473632,0.0001083076,0.000001682341,0.01066912,0.004084337,0.00301941,0.9747215],"study_design_scores_gemma":[0.0004540687,0.0002129151,0.00008007845,0.005488655,0.0007789026,0.00009771051,0.00005529995,0.00004006117,0.02183609,0.06382255,0.9053178,0.001815911],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.007507971,0.9671527,0.00655008,0.00005614813,0.00006954878,0.003817616,0.01433065,0.0003970855,0.0001182514],"genre_scores_gemma":[0.0004520155,0.950009,0.03396174,0.00002691003,0.0005794049,0.00357888,0.01115976,0.00005895515,0.000173367],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9729056,"threshold_uncertainty_score":0.9998487,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2479632906174715,"score_gpt":0.3199625646666821,"score_spread":0.07199927404921061,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}