{"id":"W2089342315","doi":"10.1016/j.molbiopara.2005.12.009","title":"Expression profiling by whole-genome interspecies microarray hybridization reveals differential gene expression in procyclic promastigotes, lesion-derived amastigotes, and axenic amastigotes in Leishmania mexicana","year":2006,"lang":"en","type":"article","venue":"Molecular and Biochemical Parasitology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":158,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Wellcome Trust; Purdue University","keywords":"Biology; Amastigote; DNA microarray; Axenic; Leishmania mexicana; Gene expression profiling; Gene; Gene expression; Transcriptome; Leishmania; Genome; Microarray; Genetics; Molecular biology; Parasite hosting","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001612512,0.0003892197,0.0007438813,0.0003231477,0.0001075118,0.00004916943,0.0001497679,0.0002900678,0.00001473886],"category_scores_gemma":[0.0003136311,0.0003303041,0.00007000964,0.0002851639,0.0004724476,0.00009286108,0.0002794823,0.0004490241,0.000002966467],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001171792,"about_ca_system_score_gemma":0.00004507746,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001219389,"about_ca_topic_score_gemma":0.00002630755,"domain_scores_codex":[0.997265,0.0002211392,0.0006361068,0.0009300828,0.0003224217,0.0006252636],"domain_scores_gemma":[0.9992042,0.0001093097,0.0001475398,0.0002615106,0.0000906724,0.0001867719],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003468017,0.0002764164,0.09607924,0.0001857559,0.00001922945,0.0001243803,0.00008661232,0.000003320946,0.9022793,0.00001454785,0.0004308377,0.0001535248],"study_design_scores_gemma":[0.002063497,0.0001843802,0.1366206,0.0003417615,0.00002651766,0.00008755951,0.00009223451,0.00008514938,0.8599363,0.0002314776,0.0000541268,0.0002763934],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9869152,0.008611658,0.002376275,0.0009858158,0.0000389986,0.0009484489,0.00002980643,0.00004893838,0.00004487997],"genre_scores_gemma":[0.9948962,0.0002575839,0.004033821,0.0000721641,0.00007919235,0.0001208864,0.0004587286,0.00003916338,0.00004222824],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04234306,"threshold_uncertainty_score":0.9999149,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01179554720912764,"score_gpt":0.2744385748696263,"score_spread":0.2626430276604987,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}