{"id":"W2089390902","doi":"10.1371/journal.ppat.0030048","title":"Type III Effector Activation via Nucleotide Binding, Phosphorylation, and Host Target Interaction","year":2007,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":96,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; U.S. Department of Energy","keywords":"Effector; Arabidopsis; Chemistry; Binding site; Cell biology; Nucleotide; Phosphorylation; Pseudomonas syringae; Plasma protein binding; Biology; Biochemistry; Mutant; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001896745,0.000111239,0.0001090312,0.00002718436,0.0002730207,0.00005363644,0.00007040738,0.00007340026,0.0005317346],"category_scores_gemma":[0.00008136585,0.000052174,0.0000367609,0.0002290512,0.00002277735,0.0002556771,0.00003507015,0.0001530041,0.0001290389],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004910252,"about_ca_system_score_gemma":0.000003255242,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002317389,"about_ca_topic_score_gemma":0.0001791146,"domain_scores_codex":[0.9993286,0.0000405127,0.000172253,0.0001786615,0.00009534936,0.000184667],"domain_scores_gemma":[0.9994651,0.0002252704,0.0001057929,0.0000455498,0.00009202018,0.0000662858],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007572855,0.00008854128,0.01174881,0.000003292093,0.00001544137,0.000002092802,0.00008518469,6.055649e-7,0.9810668,0.000007622368,0.0002660967,0.00663983],"study_design_scores_gemma":[0.0001195781,0.0002039091,0.3502522,0.0000411064,0.00001604908,0.00001601718,0.0002748465,0.0002014262,0.6357725,0.00001901244,0.01290985,0.0001734909],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986183,0.00002492234,0.00007399268,0.0001102321,0.0002442037,0.0001602222,0.00004318251,0.00006487966,0.0006600355],"genre_scores_gemma":[0.9991555,0.00002746484,0.0001752092,0.00009312344,0.0001448641,0.000003266041,0.0001997091,0.000001565597,0.0001993498],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3452943,"threshold_uncertainty_score":0.5822121,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01710109288437937,"score_gpt":0.2263673960181615,"score_spread":0.2092663031337821,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}