{"id":"W2089539551","doi":"10.1186/1752-0509-7-87","title":"Modularity and evolutionary constraints in a baculovirus gene regulatory network","year":2013,"lang":"en","type":"article","venue":"BMC Systems Biology","topic":"Viral Infectious Diseases and Gene Expression in Insects","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação de Amparo à Pesquisa do Estado de São Paulo; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; CancerCare Manitoba Foundation","keywords":"Biology; ORFS; Genetics; Gene; Genome; Gene regulatory network; Computational biology; Systems biology; Open reading frame; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000161839,0.0001559526,0.0001993581,0.00004279587,0.00008223984,0.00002055788,0.0001009357,0.0002949582,0.00004929926],"category_scores_gemma":[0.00005220569,0.000139467,0.0000584618,0.00006833974,0.0002244622,0.000005317713,0.0001299854,0.00007566618,0.00002899963],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001876676,"about_ca_system_score_gemma":0.00006660294,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004622498,"about_ca_topic_score_gemma":0.00005490618,"domain_scores_codex":[0.9987105,0.0002512485,0.0002713106,0.0004060934,0.0000502011,0.0003107055],"domain_scores_gemma":[0.9994291,0.00002130081,0.00008591847,0.0002908196,0.0000603953,0.0001124763],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006537278,0.00008674598,0.4707005,0.00006203479,0.00005458956,0.000003610782,0.00001604835,0.001410089,0.5098162,0.001462095,0.01467181,0.001650972],"study_design_scores_gemma":[0.002680137,0.0007681955,0.964545,0.000139902,0.00002762025,0.0002991788,0.0001738597,0.003182309,0.006781018,0.004428509,0.01599314,0.0009811439],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9886002,0.00823372,0.001280195,0.00001777474,0.0005628402,0.0004263161,0.00002791827,0.0000191621,0.0008318551],"genre_scores_gemma":[0.9982966,0.0001278859,0.000469657,0.0001391074,0.0004962619,0.0001667818,0.00009287347,0.0000136158,0.0001971822],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5030351,"threshold_uncertainty_score":0.5687298,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01113880836845419,"score_gpt":0.2396480022588915,"score_spread":0.2285091938904373,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}