{"id":"W2089575678","doi":"10.1073/pnas.0809160105","title":"Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments","year":2008,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":138,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Genome; Phototroph; Gene; Genome size; Rhodopseudomonas; Rhodopseudomonas palustris; Ecotype; Bacterial genome size; Strain (injury); Bacteria; Nitrogen fixation; Genetics; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004843044,0.00007987582,0.0001479288,0.00006586783,0.0003008568,0.000002475017,0.0008335313,0.00005956487,0.0003345941],"category_scores_gemma":[0.0001289607,0.00005970584,0.00005522126,0.0004241692,0.001701511,0.0002033182,0.0003602091,0.0001237011,0.00001512587],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005833401,"about_ca_system_score_gemma":0.00001415103,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007505541,"about_ca_topic_score_gemma":0.000001432816,"domain_scores_codex":[0.9989414,0.00001883075,0.0002927462,0.0001811649,0.0004183064,0.0001475971],"domain_scores_gemma":[0.999522,0.00008836557,0.0003083509,0.00001373046,0.00002951641,0.00003800126],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001818077,0.0000694897,0.025179,0.00000742568,0.000007242497,5.718193e-9,0.000657025,0.001123314,0.9723237,0.0001494056,0.0004455652,0.00001967166],"study_design_scores_gemma":[0.0001135916,0.0001110931,0.7443255,0.00001379381,0.000005481287,0.000008894041,0.00008464714,0.00008605896,0.2522029,0.002406062,0.0005775234,0.00006442001],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970999,0.00001711483,8.388603e-7,0.0009280005,0.00001351782,0.0002025716,0.00003265845,0.000003508026,0.001701898],"genre_scores_gemma":[0.996587,0.00003134916,0.002771489,0.000418119,0.00001338962,0.00001041703,5.115922e-7,0.000002411097,0.0001653206],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7201207,"threshold_uncertainty_score":0.6269286,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04222914249849824,"score_gpt":0.2603100871659429,"score_spread":0.2180809446674447,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}