{"id":"W2089819256","doi":"10.1007/s11295-012-0569-5","title":"A second-generation diagnostic single nucleotide polymorphism (SNP)-based assay, optimized to distinguish among eight poplar (Populus L.) species and their early hybrids","year":2012,"lang":"en","type":"article","venue":"Tree Genetics & Genomes","topic":"Bioenergy crop production and management","field":"Agricultural and Biological Sciences","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"Natural Resources Canada; Canadian Forest Service","funders":"Institut National de la Recherche Agronomique; Natural Resources Canada; Génome Québec; Agriculture and Agri-Food Canada; McGill University","keywords":"Biology; Hybrid; Single-nucleotide polymorphism; Botany; Locus (genetics); Populus trichocarpa; Molecular Inversion Probe; SNP genotyping; Salicaceae; Genotyping; Genotype; Genetics; Woody plant; Gene; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002654364,0.0002613813,0.0002366012,0.00004085934,0.0003281055,0.0001979535,0.0001979377,0.00007122372,0.000483565],"category_scores_gemma":[0.00007593112,0.0001251008,0.00008374952,0.0002295303,0.0001104672,0.00009328245,0.0001435087,0.00007955586,0.00003135929],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000461858,"about_ca_system_score_gemma":0.000005911071,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001351067,"about_ca_topic_score_gemma":0.001383185,"domain_scores_codex":[0.9985607,0.0001123771,0.0002718188,0.0004077446,0.0001789338,0.000468417],"domain_scores_gemma":[0.999285,0.0001177782,0.0001066083,0.0001453605,0.00006650089,0.0002786942],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007053471,0.000629325,0.1125235,0.00002612086,0.0001266347,0.00001112092,0.001272416,0.0005880358,0.6063007,0.0004175907,0.008809798,0.2692242],"study_design_scores_gemma":[0.0004019571,0.0004145664,0.8054777,0.00001420467,0.00005426227,0.000004616897,0.0002698829,0.000310204,0.04683471,0.00007379181,0.1455936,0.0005504725],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934046,0.002643835,0.0001962095,0.001541798,0.0006181234,0.0003520783,0.00006316067,0.00008347735,0.001096698],"genre_scores_gemma":[0.9940161,0.0001372739,0.001377268,0.0005552674,0.001483481,0.00003676956,0.0001214425,0.000005767542,0.002266678],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6929542,"threshold_uncertainty_score":0.5294697,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03016539708333615,"score_gpt":0.2015588319347476,"score_spread":0.1713934348514114,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}