{"id":"W2089825952","doi":"10.1007/s11427-008-0131-8","title":"The variable codons of H5N1 avian influenza A virus haemagglutinin genes","year":2008,"lang":"en","type":"article","venue":"Science in China Series C Life Sciences","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"ca_institutions":"Royal Ontario Museum","funders":"","keywords":"Influenza A virus subtype H5N1; Biology; Nonsynonymous substitution; Host (biology); Virology; Gene; Phylogenetic tree; Neuraminidase; H5N1 genetic structure; Virus; Genetics; Genome; Coronavirus disease 2019 (COVID-19)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":["sts"],"category_scores_codex":[0.004440257,0.0002143428,0.0004246054,0.0004811855,0.003059475,0.00009282146,0.001332475,0.00005638711,0.00005551911],"category_scores_gemma":[0.006168615,0.0001284013,0.00007058998,0.005227928,0.02310478,0.001166353,0.0005664052,0.0003072478,0.00002648635],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001064447,"about_ca_system_score_gemma":0.003644108,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001169701,"about_ca_topic_score_gemma":0.0002691388,"domain_scores_codex":[0.9956091,0.0001107325,0.0006183144,0.0005940749,0.00200474,0.001063025],"domain_scores_gemma":[0.9982203,0.0003740185,0.000203591,0.0005567803,0.0003589322,0.0002863574],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004729759,0.0002680939,0.8921736,0.0001107365,0.00002994675,0.0000657065,0.01054193,0.0009143437,0.07518861,0.01585138,0.001203278,0.003179429],"study_design_scores_gemma":[0.0009770867,0.001259662,0.9146947,0.0002236288,0.00001612265,0.0002046603,0.005644889,0.001134816,0.04447012,0.002711425,0.0282704,0.000392556],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9767741,0.0028307,0.00001234287,0.002024756,0.0003794399,0.0004477891,0.0000135922,0.00004753334,0.01746974],"genre_scores_gemma":[0.9912974,0.002272923,0.004931577,0.0006039902,0.0001031121,0.00005438382,3.904984e-7,0.00001097507,0.0007252409],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0307185,"threshold_uncertainty_score":0.9982384,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0982503365179427,"score_gpt":0.3812500356650733,"score_spread":0.2829996991471306,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}