{"id":"W2090175965","doi":"10.1101/gr.134601.111","title":"RNA-seq analysis of the <i>C. briggsae</i> transcriptome","year":2012,"lang":"en","type":"article","venue":"Genome Research","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"Michael Smith Health Research BC; Simon Fraser University; BC Cancer Agency","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Biology; Genome; Genetics; Comparative genomics; Intron; Gene; Synteny; Caenorhabditis; Caenorhabditis elegans; Genome project; Genomics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002790925,0.0005108903,0.000535644,0.000533067,0.0006737412,0.000544565,0.0002854091,0.0003514364,0.001379694],"category_scores_gemma":[0.0003298557,0.0002088717,0.0006965864,0.0005778577,0.0002806286,0.0002167182,0.0003403581,0.0007725279,0.001314623],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003956768,"about_ca_system_score_gemma":0.000692985,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003967805,"about_ca_topic_score_gemma":0.007432804,"domain_scores_codex":[0.999764,0.0000124056,0.0000165462,0.00009729741,0.00007030179,0.00003941618],"domain_scores_gemma":[0.99981,0.0000469497,0.00002664531,0.0000261679,0.00006774168,0.0000224293],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005809972,0.000009575184,0.0008501859,0.0001195053,0.000009273791,0.00004783357,0.00004542425,0.0001634878,0.9957715,0.000063207,0.0004956932,0.002366212],"study_design_scores_gemma":[0.00003248086,0.0002246655,0.1146707,0.00009194299,0.0001232762,0.0004633148,0.0003024199,0.007664792,0.8397174,0.0003010228,0.03633704,0.00007098838],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8365882,0.002189215,0.0499445,0.0005732077,0.0002667235,0.0004469006,0.09816018,0.002897605,0.008933572],"genre_scores_gemma":[0.6716173,0.002655871,0.13433,0.001650254,0.000119779,0.0009473403,0.176015,0.001741567,0.01092296],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003967805,"threshold_uncertainty_score":0.00788939,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0488019081444276,"score_gpt":0.3280978358169412,"score_spread":0.2792959276725136,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}