{"id":"W2090175965","doi":"10.1101/gr.134601.111","title":"RNA-seq analysis of the <i>C. briggsae</i> transcriptome","year":2012,"lang":"en","type":"article","venue":"Genome Research","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"Michael Smith Health Research BC; Simon Fraser University; BC Cancer Agency","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Biology; Genome; Genetics; Comparative genomics; Intron; Gene; Synteny; Caenorhabditis; Caenorhabditis elegans; Genome project; Genomics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001296227,0.0001178239,0.0002006588,0.0001788566,0.0001625966,0.00002215129,0.0006032659,0.0001333579,0.000148754],"category_scores_gemma":[0.00006605474,0.00009099539,0.0002559596,0.0008343714,0.0002792381,0.000003906306,0.0002251441,0.000209615,0.0000267489],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002436714,"about_ca_system_score_gemma":0.00008958877,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001313285,"about_ca_topic_score_gemma":0.00007292209,"domain_scores_codex":[0.9981325,0.000264316,0.0002222574,0.00025734,0.0005158937,0.0006077191],"domain_scores_gemma":[0.998763,0.0000206089,0.0000488117,0.0008058273,0.0002127384,0.000149045],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001679792,0.00009779249,0.01652239,0.00002339552,0.0004180813,2.829472e-7,0.0009221159,0.0002694887,0.9807194,0.0001096278,0.0004694406,0.0004311887],"study_design_scores_gemma":[0.0004752325,0.0002106624,0.2802671,0.000007369028,0.0004858669,0.00000741697,0.000456111,0.0001206021,0.5979804,0.0001565437,0.1194679,0.0003647421],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909919,0.004117975,0.001371443,0.0002740656,0.0001415663,0.0002063513,0.00004698732,0.000005754107,0.00284397],"genre_scores_gemma":[0.9967396,0.0004765085,0.0002321896,0.0001204562,0.0002402409,0.00001363855,0.00004086686,0.00002203508,0.002114412],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.382739,"threshold_uncertainty_score":0.3710684,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0488019081444276,"score_gpt":0.3280978358169412,"score_spread":0.2792959276725136,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}