{"id":"W2090220303","doi":"10.1073/pnas.0711084105","title":"Direct phylogenetic evidence for lateral transfer of elongation factor-like gene","year":2008,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Japan Agency for Marine-Earth Science and Technology; University of Tsukuba","keywords":"Thalassiosira pseudonana; Biology; Phaeodactylum tricornutum; Gene; Horizontal gene transfer; Phylogenetic tree; Genome; Phylogenetics; Genetics; Diatom; Elongation factor; Gene family; Botany; RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002953876,0.00005915381,0.00009174569,0.00004225029,0.0001222555,0.000003248528,0.0004056237,0.00007269828,0.000003540334],"category_scores_gemma":[0.0001579695,0.00004446468,0.00008458223,0.0001571112,0.0004694107,0.00001790741,0.00004895076,0.0000327737,1.559346e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000612706,"about_ca_system_score_gemma":0.00003387616,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003697271,"about_ca_topic_score_gemma":7.843769e-8,"domain_scores_codex":[0.9992347,0.000005103253,0.0001615682,0.0001648818,0.0003471104,0.00008662428],"domain_scores_gemma":[0.9996032,0.00003115103,0.0001133814,0.000007737072,0.0002269345,0.00001760321],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004581499,0.00001847572,0.04537425,0.00004200742,0.00001430692,1.47078e-9,0.00008963588,0.00004931067,0.9538807,0.0003032157,0.0001119577,0.00007037944],"study_design_scores_gemma":[0.0001109111,0.00009283881,0.2368277,0.00002034997,0.000006413649,0.000002703696,0.000006109458,0.00003805261,0.7621338,0.0006598355,0.00006119422,0.00004012834],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990048,0.000332074,0.00001787506,0.0001748892,0.00001467283,0.0001837382,0.00005789969,0.000001621877,0.0002124121],"genre_scores_gemma":[0.9987998,0.0001440077,0.0008338797,0.00008524892,0.00004711069,0.000006677306,6.595391e-7,0.000002096166,0.00008052748],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1917469,"threshold_uncertainty_score":0.1813217,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.082830740973425,"score_gpt":0.3060680661175204,"score_spread":0.2232373251440954,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}