{"id":"W2090443474","doi":"10.1073/pnas.1105107108","title":"Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of <i>Yersinia pestis</i> from victims of the Black Death","year":2011,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":260,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Social Sciences and Humanities Research Council of Canada; Michael G. DeGroote Institute for Infectious Disease Research, McMaster University; McMaster University; Eberhard Karls Universität Tübingen; University at Albany; Canadian Institutes of Health Research; Max-Planck-Institut für Evolutionäre Anthropologie; Eunice Kennedy Shriver National Institute of Child Health and Human Development; Canada Research Chairs","keywords":"Yersinia pestis; Plasmid; Plague (disease); Virology; Biology; Microbiology; Genetics; Medicine; Gene; Virulence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001174379,0.0002559703,0.0001911568,0.0003603007,0.0002481584,0.0002855294,0.0001561447,0.0002705096,0.0006946076],"category_scores_gemma":[0.0002544459,0.0001317829,0.0001519877,0.0003152665,0.0002324538,0.0001294748,0.0003501395,0.0002329219,0.0002426133],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001227758,"about_ca_system_score_gemma":0.0001293169,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001417164,"about_ca_topic_score_gemma":0.001865142,"domain_scores_codex":[0.9998881,0.00001237957,0.000006086351,0.0000364858,0.0000236589,0.00003338331],"domain_scores_gemma":[0.9998969,0.00002632941,0.00003065868,0.000008906263,0.00001940006,0.00001782508],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009894731,0.00002662417,0.01008709,0.00004359795,0.00001279707,0.0001174565,0.000105468,0.00007306995,0.9866351,0.00004070886,0.00003956313,0.002719541],"study_design_scores_gemma":[0.00002969412,0.001258489,0.3892564,0.0000364379,0.000117275,0.00269614,0.0008891596,0.00202952,0.5980198,0.0001616195,0.005486565,0.00001887219],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971414,0.0002155052,0.00163896,0.00003419576,0.000004287586,0.00003049074,0.0004527306,0.00001407082,0.0004682106],"genre_scores_gemma":[0.9905611,0.000526782,0.004665837,0.00006197967,0.00000931555,0.00002691213,0.002652391,0.0000171273,0.001478537],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001417164,"threshold_uncertainty_score":0.00281781,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04543567829951986,"score_gpt":0.2870822526330292,"score_spread":0.2416465743335093,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}