{"id":"W2090663005","doi":"10.1186/1753-6561-8-s2-s1","title":"Understanding the sequence requirements of protein families: insights from the BioVis 2013 contests","year":2014,"lang":"en","type":"article","venue":"BMC Proceedings","topic":"Erythrocyte Function and Pathophysiology","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia","funders":"Research Institute, Nationwide Children's Hospital; Nationwide Children's Hospital; Ohio State University","keywords":"Medicine; Sequence (biology); Computational biology; Bioinformatics; Genetics; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002171303,0.0001394865,0.0002303413,0.00004232199,0.0001670459,0.00002042214,0.0001803225,0.00008490971,0.00004732592],"category_scores_gemma":[0.0004039167,0.00007033412,0.00007289164,0.0002135092,0.0002940572,0.0001073381,0.00005929774,0.0001774687,0.00004105204],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007308073,"about_ca_system_score_gemma":0.00006246714,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001661198,"about_ca_topic_score_gemma":0.00004365271,"domain_scores_codex":[0.9990411,0.00003033863,0.0002602881,0.0002414396,0.0002543733,0.0001724612],"domain_scores_gemma":[0.9992176,0.000184781,0.0001895113,0.0001921596,0.0001593594,0.00005654478],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005348359,0.0000944713,0.03033926,0.0002522694,0.00009699098,0.000001043064,0.005240667,0.000002196841,0.9099331,0.04462728,0.008496625,0.0003812355],"study_design_scores_gemma":[0.02174531,0.008116727,0.2796224,0.007480276,0.001150561,0.0001417251,0.09254349,0.01916744,0.2422478,0.1907945,0.13479,0.002199801],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.98812,0.0001766449,0.002664622,0.001577154,0.0001926425,0.0007773336,0.000005075348,0.00006831238,0.00641827],"genre_scores_gemma":[0.9975984,0.0000453643,0.0004113618,0.00128086,0.0002521786,0.0000461099,0.000008220476,0.00001541859,0.0003421435],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6676854,"threshold_uncertainty_score":0.2868142,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1458100017706784,"score_gpt":0.29139043973795,"score_spread":0.1455804379672715,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}