{"id":"W2091071328","doi":"10.1128/jvi.02459-08","title":"HLA-Associated Viral Mutations Are Common in Human Immunodeficiency Virus Type 1 Elite Controllers","year":2009,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"AIDS Vancouver; University of British Columbia","funders":"Center for AIDS Research, University of Washington; Harvard University Center for AIDS Research; Harvard University; National Institutes of Health; International AIDS Vaccine Initiative; National Institute of Allergy and Infectious Diseases; Bill and Melinda Gates Foundation; Howard Hughes Medical Institute","keywords":"Biology; Viremia; Human leukocyte antigen; Virology; Cytotoxic T cell; CD8; Immune system; Viral replication; Virus; Immunology; Viral load; Antigen; Genetics; In vitro","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004229531,0.0001281094,0.0004692925,0.000318084,0.0001580269,0.00001114174,0.0002135031,0.0002210877,0.0002963263],"category_scores_gemma":[0.0001658346,0.0001027279,0.0001252777,0.0001759593,0.0001532674,0.00008780359,0.00002034191,0.0005839769,0.0002154806],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001385779,"about_ca_system_score_gemma":0.00008237801,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008930241,"about_ca_topic_score_gemma":0.0001801172,"domain_scores_codex":[0.9984297,0.0004620267,0.0005344032,0.0001198893,0.00005613463,0.0003978607],"domain_scores_gemma":[0.9991755,0.000143089,0.0003853856,0.0001328611,0.0001298241,0.00003333942],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001376449,0.001794949,0.02471061,0.000002208273,0.0003830763,0.0004566236,0.0005309233,0.0002835891,0.9639063,0.0004318905,0.001607559,0.004515763],"study_design_scores_gemma":[0.01409244,0.006524272,0.9632313,0.00005091598,0.0001112929,0.0003518721,0.0002802603,0.00001834265,0.0065482,0.00255331,0.006028339,0.0002095022],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924067,0.004983111,0.000008242097,0.001053391,0.0002281066,0.0001184024,0.00002746267,0.00001107193,0.001163573],"genre_scores_gemma":[0.9990067,0.0002402805,0.00001138398,0.000331428,0.00001675107,0.000002194908,0.00005487655,0.00000643236,0.0003299347],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9573582,"threshold_uncertainty_score":0.4189123,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01496435988679014,"score_gpt":0.3012281780899045,"score_spread":0.2862638182031144,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}