{"id":"W2091071328","doi":"10.1128/jvi.02459-08","title":"HLA-Associated Viral Mutations Are Common in Human Immunodeficiency Virus Type 1 Elite Controllers","year":2009,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"AIDS Vancouver; University of British Columbia","funders":"Center for AIDS Research, University of Washington; Harvard University Center for AIDS Research; Harvard University; National Institutes of Health; International AIDS Vaccine Initiative; National Institute of Allergy and Infectious Diseases; Bill and Melinda Gates Foundation; Howard Hughes Medical Institute","keywords":"Biology; Viremia; Human leukocyte antigen; Virology; Cytotoxic T cell; CD8; Immune system; Viral replication; Virus; Immunology; Viral load; Antigen; Genetics; In vitro","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004080342,0.0003361018,0.0003150267,0.001463879,0.0004801496,0.0007453606,0.0003993625,0.0008172546,0.003378646],"category_scores_gemma":[0.003025505,0.0001999456,0.0001536362,0.000869483,0.0005187886,0.0003794193,0.0004284935,0.0005597661,0.0002517397],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001140852,"about_ca_system_score_gemma":0.0001008405,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004222257,"about_ca_topic_score_gemma":0.0003878516,"domain_scores_codex":[0.999483,0.00008172188,0.00006450032,0.0001504625,0.00011617,0.0001042083],"domain_scores_gemma":[0.9978787,0.0007516656,0.0007250587,0.0002313616,0.000116831,0.0002965175],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001880004,0.0004026258,0.8728958,0.0001139274,0.0001988937,0.00922876,0.0007324455,0.0003028742,0.06376705,0.0006557205,0.0004066719,0.04941515],"study_design_scores_gemma":[0.00009364778,0.001229958,0.9448045,0.00003936383,0.0001605184,0.0434126,0.0006451891,0.0007793767,0.006151144,0.0007565351,0.001894167,0.00003286895],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990396,0.0002947105,0.0001699983,0.00001080897,0.000004384469,0.000008570164,0.00004668777,0.00001012291,0.0004151215],"genre_scores_gemma":[0.9995599,0.0001011178,0.00007219305,0.00001833369,0.00001178819,0.00000381412,0.00007319033,0.000003740206,0.0001558188],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003378646,"threshold_uncertainty_score":0.01130277,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01496435988679014,"score_gpt":0.3012281780899045,"score_spread":0.2862638182031144,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}