{"id":"W2091512413","doi":"10.1371/journal.pone.0065132","title":"Interactions between the R2R3-MYB Transcription Factor, AtMYB61, and Target DNA Binding Sites","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; DNA; Transcription factor; MYB; Gene; Genetics; Transcription (linguistics); DNA binding site; Response element; Regulatory sequence; Promoter; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005259149,0.000102084,0.0001229752,0.00004182441,0.0001250942,0.00005352388,0.0001148586,0.00006795896,0.0003200606],"category_scores_gemma":[0.00005049981,0.00007453278,0.00005385344,0.00006567485,0.00003608846,0.00001108344,0.00004672397,0.00009386794,0.00007565364],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007657361,"about_ca_system_score_gemma":0.000008749356,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002031411,"about_ca_topic_score_gemma":0.00001875451,"domain_scores_codex":[0.9993439,0.00005696783,0.0001342667,0.0002038462,0.000118699,0.0001423311],"domain_scores_gemma":[0.9996081,0.00002712674,0.00005435066,0.0001959398,0.00004735746,0.00006712083],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000004160261,0.00006738001,0.02121561,0.000007879329,0.0002266593,1.836288e-7,0.00006492363,7.191834e-7,0.9750331,0.000001489326,0.003165154,0.0002127328],"study_design_scores_gemma":[0.0001347726,0.00004052194,0.01112764,0.00002233664,0.0001022875,0.000001253163,0.00008183105,0.0001755386,0.9842572,0.00003263161,0.003905806,0.0001181813],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981003,0.0001230741,0.0002287389,0.000780892,0.00002003764,0.0001434468,0.00007603702,0.00001536214,0.0005120799],"genre_scores_gemma":[0.9965281,0.0001526425,0.0007054477,0.0001184241,0.0001639925,0.00002816145,0.0003232191,0.0000118625,0.001968166],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01008796,"threshold_uncertainty_score":0.350444,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03950590798339691,"score_gpt":0.2390273877407215,"score_spread":0.1995214797573246,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}