{"id":"W2091974975","doi":"10.1186/1742-4690-10-s1-p17","title":"Differential effects of Tra2β isoforms on HIV-1 RNA processing and expression","year":2013,"lang":"en","type":"article","venue":"Retrovirology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"RNA splicing; RNA; Gene expression; Human immunodeficiency virus (HIV); Viral replication; Gene isoform; Biology; Computational biology; Messenger RNA; Gene; Cell biology; Virology; Virus; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003328474,0.00009771709,0.0001425099,0.00004708457,0.00005231413,0.00001246492,0.00009323932,0.0001480771,0.00002851232],"category_scores_gemma":[0.00007698717,0.00007154699,0.00003623204,0.00002882701,0.0001001718,0.000004795875,0.00007597795,0.000101354,0.000008830165],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004543273,"about_ca_system_score_gemma":0.0000167614,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001314993,"about_ca_topic_score_gemma":0.000001304985,"domain_scores_codex":[0.9992924,0.00004532164,0.0001176382,0.000217802,0.0000899192,0.0002368649],"domain_scores_gemma":[0.9996593,0.00002221621,0.00005370938,0.0001568374,0.00002850239,0.00007944026],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009022561,0.00003749761,0.003304593,0.00008011345,0.000008884804,0.000001558008,0.0000180407,0.00000174031,0.9806456,0.0000150106,0.0003541033,0.01544265],"study_design_scores_gemma":[0.0006629527,0.001149648,0.02580368,0.00003072913,0.000005034444,0.000005664334,0.00001332335,0.0002913338,0.9717379,0.00005513818,0.0001634309,0.00008120419],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980349,0.0002382727,0.001159548,0.00009858812,0.00003861721,0.000169776,0.000001426449,0.000005991034,0.0002528765],"genre_scores_gemma":[0.9989246,0.00009834351,0.0001331805,0.00009494719,0.00008801386,0.00002291082,0.00001527959,0.00001193999,0.0006108122],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02249908,"threshold_uncertainty_score":0.2917602,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004290024510514517,"score_gpt":0.2299596866410988,"score_spread":0.2256696621305842,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}