{"id":"W2092120709","doi":"10.1089/cmb.2007.a007","title":"Duplication and Inversion History of a Tandemly Repeated Genes Family","year":2007,"lang":"en","type":"article","venue":"Journal of Computational Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"","keywords":"Phylogenetic tree; Biology; Gene duplication; Phylogenetics; Gene; Chromosomal inversion; Gene family; Genetics; Breakpoint; Chromosome; Segmental duplication; Inference; Maximum parsimony; Evolutionary biology; Genome; Karyotype; Computer science; Artificial intelligence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002860979,0.00005535317,0.000118228,0.00006535868,0.00001694557,0.000001165735,0.0000580571,0.00006790327,0.000002307983],"category_scores_gemma":[0.00003563904,0.0000478291,0.00004470817,0.00002677198,0.0001019752,7.180456e-7,0.00003398748,0.00003542668,3.713945e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002309475,"about_ca_system_score_gemma":0.0000953296,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005034768,"about_ca_topic_score_gemma":0.000001996472,"domain_scores_codex":[0.9994891,0.0000270638,0.0002835191,0.00008351985,0.00005063616,0.00006616233],"domain_scores_gemma":[0.9993188,0.00004092447,0.0002829295,0.00004681663,0.0002767213,0.00003383526],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001467158,0.00002542441,0.01929357,0.000006237216,0.00007495969,0.000001013843,0.0000695008,0.0004873276,0.9703006,0.0003301536,0.0008762926,0.008388182],"study_design_scores_gemma":[0.002390778,0.002549906,0.7036268,0.00002551152,0.00008209974,0.0002396654,0.000259843,0.0005286967,0.05295944,0.009052107,0.2279884,0.0002966881],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9823915,0.008276839,0.008791814,0.00007060437,0.0001853865,0.00003350135,0.000003540909,5.404693e-7,0.0002462183],"genre_scores_gemma":[0.9944227,0.0005952457,0.004656383,0.0001620693,0.0001066121,2.883862e-7,0.00001229496,0.000003688819,0.00004070865],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9173412,"threshold_uncertainty_score":0.1950414,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01476863121669693,"score_gpt":0.2472926858771418,"score_spread":0.2325240546604449,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}