{"id":"W2092120709","doi":"10.1089/cmb.2007.a007","title":"Duplication and Inversion History of a Tandemly Repeated Genes Family","year":2007,"lang":"en","type":"article","venue":"Journal of Computational Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"","keywords":"Phylogenetic tree; Biology; Gene duplication; Phylogenetics; Gene; Chromosomal inversion; Gene family; Genetics; Breakpoint; Chromosome; Segmental duplication; Inference; Maximum parsimony; Evolutionary biology; Genome; Karyotype; Computer science; Artificial intelligence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004665209,0.0001072677,0.0003008801,0.000707554,0.0004699769,0.000449961,0.0004853052,0.0004278535,0.001151127],"category_scores_gemma":[0.004036254,0.0001961551,0.0002284119,0.0007205997,0.0004623825,0.0008611776,0.0002791303,0.0004275324,0.00018171],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005214093,"about_ca_system_score_gemma":0.0004074775,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001027967,"about_ca_topic_score_gemma":0.001311628,"domain_scores_codex":[0.9998166,0.00004190453,0.00001029242,0.00006002976,0.0000462693,0.00002504504],"domain_scores_gemma":[0.9985666,0.0008349746,0.0002747102,0.00008510196,0.0001274801,0.0001112094],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001002808,0.0001568789,0.2238062,0.0003045881,0.0001570649,0.002347152,0.0007819752,0.3849421,0.2471107,0.06054909,0.0008516628,0.07798976],"study_design_scores_gemma":[0.00007621827,0.0003584576,0.08279686,0.00004572169,0.0001206091,0.002877543,0.0003720559,0.8190663,0.02727844,0.06379347,0.003147436,0.00006694593],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9820083,0.000112978,0.0169507,0.00006293572,0.000001902714,0.000004803216,0.0001044853,0.00003448853,0.0007194775],"genre_scores_gemma":[0.9867487,0.0000587558,0.01265734,0.000009420249,0.000002984466,0.000006479236,0.0002312112,0.000009476457,0.0002757591],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001151127,"threshold_uncertainty_score":0.003850877,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01476863121669693,"score_gpt":0.2472926858771418,"score_spread":0.2325240546604449,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}