{"id":"W2092193084","doi":"10.1371/journal.pone.0034953","title":"Antibiotic Resistance Is Prevalent in an Isolated Cave Microbiome","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":722,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Canada Research Chairs; National Science Foundation","keywords":"Antibiotics; Antibiotic resistance; Microbiome; Biology; Microbiology; Drug resistance; Daptomycin; Bacteria; Genetics; Staphylococcus aureus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009943514,0.0001138261,0.0001414177,0.00003212116,0.00003872989,0.00000987868,0.0001139746,0.00008679416,0.00001530743],"category_scores_gemma":[0.00001131265,0.0001161174,0.00003015363,0.00006806088,0.00003762412,0.000001199401,0.00007310931,0.00004906347,0.00001911011],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001426804,"about_ca_system_score_gemma":0.00001239884,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009730396,"about_ca_topic_score_gemma":0.00006327841,"domain_scores_codex":[0.9992444,0.00003501547,0.0001487477,0.000220434,0.00006637026,0.0002850592],"domain_scores_gemma":[0.9995502,0.000003976554,0.00004396845,0.0002870189,0.0000452847,0.00006954065],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004102598,0.0006371655,0.06927297,0.00004913826,0.00008620289,5.41447e-7,0.0002912169,6.268521e-7,0.9293982,0.000008501214,0.0001748791,0.00003956],"study_design_scores_gemma":[0.000395893,0.0001883177,0.09486308,0.00005473617,0.00005053397,0.000001169397,0.00005831038,0.00001549579,0.9026309,0.00002113613,0.001484979,0.0002354265],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929809,0.006171212,0.000007829132,0.0001069243,0.00004069114,0.0001712153,0.00003682933,0.000003163261,0.0004812625],"genre_scores_gemma":[0.9969711,0.0005586954,0.001095191,0.0002261951,0.0001356865,0.000005791575,0.0000268632,0.00001793938,0.0009625836],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02676725,"threshold_uncertainty_score":0.4735129,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02881036750725113,"score_gpt":0.2321256368068132,"score_spread":0.2033152692995621,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}