{"id":"W2092248159","doi":"10.1186/1471-2164-9-304","title":"SjTPdb: integrated transcriptome and proteome database and analysis platform for Schistosoma japonicum","year":2008,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Shanghai Rising-Star Program; China Postdoctoral Science Foundation; School of Medicine, New York University; York University; George Washington University","keywords":"Schistosoma japonicum; Biology; Transcriptome; Proteome; KEGG; Computational biology; Database; UniProt; Expressed sequence tag; Proteomics; Bioinformatics; Gene; Genome; Computer science; Genetics; Gene expression; Schistosomiasis","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008037703,0.0001418951,0.0002662092,0.000195263,0.0003773897,0.00001570377,0.00008466006,0.000123581,0.00009048927],"category_scores_gemma":[0.00003187521,0.0001273506,0.00009855282,0.0001393757,0.0001825493,0.0001225937,0.00002846701,0.0001552301,0.00003092769],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004010064,"about_ca_system_score_gemma":0.00006607916,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001657457,"about_ca_topic_score_gemma":0.0004974094,"domain_scores_codex":[0.9992607,0.00002139131,0.0002125696,0.0002709084,0.00001351649,0.000220976],"domain_scores_gemma":[0.9995673,0.00009233368,0.00006833114,0.0001937739,0.0000442303,0.00003401734],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005725618,0.0001089102,0.01744827,0.00003637882,0.0008949436,0.000003353061,0.001215875,0.0000101844,0.9773766,0.0009938894,0.0007839393,0.000555061],"study_design_scores_gemma":[0.01261481,0.001361007,0.2396863,0.00007012531,0.004112466,0.002119747,0.002837798,0.003545077,0.1812342,0.0007588918,0.5496569,0.002002733],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9874541,0.002080188,0.008904819,0.00005754652,0.0001569728,0.0003846691,0.0007417919,0.00003643948,0.0001834313],"genre_scores_gemma":[0.9911366,0.0002459949,0.004902026,0.00008268605,0.00001935202,0.00006893746,0.0009515329,0.00001539557,0.002577526],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7961425,"threshold_uncertainty_score":0.5193207,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0371104390328187,"score_gpt":0.2730996962980277,"score_spread":0.235989257265209,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}