{"id":"W2092248159","doi":"10.1186/1471-2164-9-304","title":"SjTPdb: integrated transcriptome and proteome database and analysis platform for Schistosoma japonicum","year":2008,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Shanghai Rising-Star Program; China Postdoctoral Science Foundation; School of Medicine, New York University; York University; George Washington University","keywords":"Schistosoma japonicum; Biology; Transcriptome; Proteome; KEGG; Computational biology; Database; UniProt; Expressed sequence tag; Proteomics; Bioinformatics; Gene; Genome; Computer science; Genetics; Gene expression; Schistosomiasis","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001690571,0.002303065,0.001500331,0.004437541,0.0009797941,0.00199692,0.002739645,0.001076994,0.01615443],"category_scores_gemma":[0.002470627,0.0008766105,0.00135186,0.004987542,0.0003658229,0.002444646,0.003401837,0.001271636,0.01457776],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006895958,"about_ca_system_score_gemma":0.00253628,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002811768,"about_ca_topic_score_gemma":0.002162038,"domain_scores_codex":[0.9992552,0.00007803223,0.0001854405,0.0001917431,0.000191691,0.00009788237],"domain_scores_gemma":[0.9989393,0.0001120435,0.0002828194,0.000177535,0.0002001121,0.0002882235],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.008839559,0.0005720808,0.01565671,0.01663055,0.0007949194,0.003108068,0.001250214,0.003152542,0.2603926,0.008697851,0.5859097,0.09499516],"study_design_scores_gemma":[0.002534747,0.001242584,0.07872513,0.001840759,0.0008445591,0.004701944,0.0007786672,0.03033745,0.0709929,0.01059,0.7967858,0.0006253995],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.03016254,0.003486002,0.0331809,0.0005924487,0.0002683462,0.0006154884,0.8381647,0.08687401,0.006655553],"genre_scores_gemma":[0.0200182,0.0008659124,0.02513186,0.000182425,0.00003976794,0.0005080249,0.950217,0.001957368,0.001079442],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.01615443,"threshold_uncertainty_score":0.05404198,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0371104390328187,"score_gpt":0.2730996962980277,"score_spread":0.235989257265209,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}