{"id":"W2092446384","doi":"10.1128/jvi.00621-14","title":"Global Genomic Diversity of Human Papillomavirus 6 Based on 724 Isolates and 190 Complete Genome Sequences","year":2014,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Hôpital Notre-Dame; Queen's University; McGill University; Jewish General Hospital; Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute","keywords":"Biology; Indel; Phylogenetic tree; Genetics; Genome; Lineage (genetic); Single-nucleotide polymorphism; Phylogenetics; Evolutionary biology; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004036014,0.00007707509,0.0003814976,0.00009888544,0.00009418495,0.000004445524,0.0001328216,0.0000712873,0.0006548668],"category_scores_gemma":[0.00004814141,0.0000578362,0.00008758223,0.00006609676,0.0002416367,0.00002745705,0.0001010588,0.0001985739,0.000005367996],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007884905,"about_ca_system_score_gemma":0.00005354821,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001317695,"about_ca_topic_score_gemma":0.00007062397,"domain_scores_codex":[0.9991934,0.000102078,0.000254813,0.0001042546,0.0001783051,0.0001671419],"domain_scores_gemma":[0.9993569,0.000100376,0.0001618467,0.0001066717,0.0001217171,0.0001524481],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.005992746,0.0004075694,0.7088724,0.0002590386,0.0002725367,0.0001358351,0.0002698461,0.0003297667,0.2692378,0.001324007,0.0003129585,0.0125855],"study_design_scores_gemma":[0.002278675,0.005353547,0.9885694,0.000009726001,0.00007162715,0.00008365375,0.00001842357,0.0007627663,0.000146305,0.001243429,0.001412257,0.00005016662],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957914,0.0003963428,0.0001584531,0.001056802,0.00005451687,0.00005991842,0.00002638752,0.000003213517,0.002453019],"genre_scores_gemma":[0.9986646,0.0000665718,0.0001120441,0.0009714815,0.00016235,2.578136e-7,0.000001587433,0.000003876225,0.00001728532],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.279697,"threshold_uncertainty_score":0.7170332,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04315533424423636,"score_gpt":0.32751198499475,"score_spread":0.2843566507505136,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}