{"id":"W2092446384","doi":"10.1128/jvi.00621-14","title":"Global Genomic Diversity of Human Papillomavirus 6 Based on 724 Isolates and 190 Complete Genome Sequences","year":2014,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Hôpital Notre-Dame; Queen's University; McGill University; Jewish General Hospital; Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute","keywords":"Biology; Indel; Phylogenetic tree; Genetics; Genome; Lineage (genetic); Single-nucleotide polymorphism; Phylogenetics; Evolutionary biology; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002749119,0.000304593,0.0002826044,0.0008101391,0.0002167287,0.0004430239,0.0001537888,0.0002229861,0.001530068],"category_scores_gemma":[0.0006339735,0.0001274425,0.0003106517,0.001158615,0.0002068376,0.0002804946,0.0003299507,0.0002239164,0.0004378569],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001642941,"about_ca_system_score_gemma":0.0001681268,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001867649,"about_ca_topic_score_gemma":0.001824832,"domain_scores_codex":[0.9997428,0.00003705237,0.00002256584,0.0001052287,0.00004193913,0.00005045397],"domain_scores_gemma":[0.9996175,0.0000944981,0.000112497,0.00004008634,0.00008717869,0.00004816044],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008907598,0.00006468427,0.8474578,0.0002732076,0.000230217,0.0002302377,0.0007759799,0.0006827822,0.1262344,0.00009338656,0.0003379481,0.0227286],"study_design_scores_gemma":[0.000007423619,0.0002371071,0.9913503,0.00001935301,0.00007253875,0.0006842554,0.0003174602,0.0004099876,0.00474597,0.00004038595,0.002109956,0.000005301416],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952981,0.0004270028,0.0005027689,0.00001275165,0.000003043526,0.00001379399,0.003204949,0.0000155919,0.0005219252],"genre_scores_gemma":[0.989014,0.0002782925,0.001392481,0.00001694488,0.000006224935,0.00001723543,0.009078917,0.000007924195,0.0001879416],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001867649,"threshold_uncertainty_score":0.005118608,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04315533424423636,"score_gpt":0.32751198499475,"score_spread":0.2843566507505136,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}