{"id":"W2092612165","doi":"10.1371/journal.pone.0008361","title":"Genome Sequence of the Endosymbiont Rickettsia peacockii and Comparison with Virulent Rickettsia rickettsii: Identification of Virulence Factors","year":2009,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":131,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; University of Minnesota","keywords":"Biology; Virulence; Rickettsia rickettsii; Transposable element; Genome; Genetics; Transposase; Rocky Mountain spotted fever; Comparative genomics; Transposon mutagenesis; Gene; Virology; Spotted fever; Rickettsia; Genomics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001054163,0.0003293803,0.000353386,0.0006521387,0.0002201852,0.0003010704,0.0002115559,0.0003297862,0.001378537],"category_scores_gemma":[0.0003029535,0.0001227142,0.0004675876,0.00105038,0.0001035631,0.0001440478,0.000216066,0.0003109385,0.0006423827],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003283084,"about_ca_system_score_gemma":0.0004718004,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006920974,"about_ca_topic_score_gemma":0.005000505,"domain_scores_codex":[0.9998332,0.0000143241,0.00001285437,0.00006096255,0.0000446596,0.00003395012],"domain_scores_gemma":[0.9997706,0.00003844795,0.00005635901,0.00001298374,0.00005823095,0.00006337424],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004461834,0.00007970918,0.009154364,0.0002826095,0.00004312168,0.0003832263,0.0002571876,0.0002604332,0.9796753,0.00008499519,0.0002280458,0.00910488],"study_design_scores_gemma":[0.00007744951,0.0009139958,0.8980594,0.00009690945,0.0002922939,0.002586142,0.0008244261,0.001734544,0.06854527,0.0001667351,0.02666036,0.00004248954],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9771577,0.001968209,0.0026406,0.0001078949,0.00002554227,0.00009300683,0.01617314,0.00007227818,0.001761617],"genre_scores_gemma":[0.8785248,0.002054794,0.008812829,0.0001844436,0.0000326653,0.00007909183,0.1059119,0.00007042051,0.004329013],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006920974,"threshold_uncertainty_score":0.01376134,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0371816347583827,"score_gpt":0.2422366842603072,"score_spread":0.2050550495019245,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}