{"id":"W2092995073","doi":"10.1074/jbc.m111.229781","title":"5′-Methylthioadenosine Nucleosidase Is Implicated in Playing a Key Role in a Modified Futalosine Pathway for Menaquinone Biosynthesis in Campylobacter jejuni","year":2011,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Biochemical and Molecular Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Campylobacter jejuni; Biochemistry; Mutant; Hydrolase; Streptomyces; Biosynthesis; Enzyme; Biology; Metabolic pathway; Microbiology; Escherichia coli; Bacteria; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005867257,0.0002460557,0.0004568947,0.0001093287,0.00002634519,0.00001690054,0.000433078,0.0005825811,0.00008242816],"category_scores_gemma":[0.0004389042,0.0001875593,0.0002060892,0.0002812596,0.0001306712,0.000008944989,0.0001740965,0.0004398123,0.000001759483],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000068964,"about_ca_system_score_gemma":0.00009006429,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004946038,"about_ca_topic_score_gemma":0.00001161595,"domain_scores_codex":[0.9981174,0.000082284,0.0007202574,0.0004161916,0.0001549885,0.0005088435],"domain_scores_gemma":[0.9991738,0.00005117311,0.0002232549,0.0002460031,0.0001239892,0.0001817777],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001448415,0.0007032283,0.006321217,0.0000521902,0.00003185453,0.00007440113,0.00009299583,0.000001962441,0.9898821,0.000005993181,0.00006410672,0.001321546],"study_design_scores_gemma":[0.001916206,0.0004066837,0.008512015,0.00009302582,0.000006761146,0.00006879847,0.0001087103,0.00005079122,0.9876823,0.0003268849,0.0005869931,0.0002408061],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976276,0.001145953,0.00009430404,0.0003189927,0.00001684642,0.0002209468,0.00004393578,0.000004635768,0.0005267835],"genre_scores_gemma":[0.9981256,0.000261861,0.001127786,0.0002540069,0.0001001498,0.00003454877,0.00004210938,0.0000200892,0.00003380671],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002199765,"threshold_uncertainty_score":0.7648445,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03844268403088939,"score_gpt":0.2694849586697686,"score_spread":0.2310422746388792,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}