{"id":"W2093261534","doi":"10.1016/j.ygcen.2009.05.015","title":"Domestication causes large-scale effects on gene expression in rainbow trout: Analysis of muscle, liver and brain transcriptomes","year":2009,"lang":"en","type":"article","venue":"General and Comparative Endocrinology","topic":"Animal Genetics and Reproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":false,"ca_institutions":"Fisheries and Oceans Canada","funders":"","keywords":"Biology; Domestication; Rainbow trout; Transcriptome; Trout; Gene; Genetics; Gene expression; Fishery; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005647604,0.0001335158,0.0002794347,0.0001563267,0.00005138687,0.000006550453,0.00005222135,0.00007075395,0.000004152179],"category_scores_gemma":[0.0000118778,0.0001103497,0.0000527327,0.0001592802,0.00008424773,0.000003933721,0.00002658998,0.000063655,4.617642e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005081465,"about_ca_system_score_gemma":0.000009103605,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001192114,"about_ca_topic_score_gemma":0.00005618679,"domain_scores_codex":[0.9990681,0.0001188305,0.0001697144,0.0003930393,0.00005932676,0.0001909235],"domain_scores_gemma":[0.9996873,0.00002019221,0.00006117405,0.0001513237,0.00003711199,0.00004289182],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001484597,0.0001093161,0.00637599,0.000008209388,0.00007624553,0.000003258355,0.0004311597,0.0002611316,0.9878682,0.000315261,0.00009862686,0.004304153],"study_design_scores_gemma":[0.000529876,0.0007018335,0.5146589,0.000004999774,0.00006156345,0.000005737912,0.00006296772,0.0003744582,0.4822998,0.0000710949,0.00113271,0.00009611361],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954636,0.003137316,0.0008286391,0.0002739672,0.00004200571,0.0001485554,0.00001239055,0.000005126229,0.0000883824],"genre_scores_gemma":[0.997487,0.001038685,0.000858881,0.0002352951,0.00008352401,0.00001324768,0.00006581375,0.000003586228,0.0002139638],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5082828,"threshold_uncertainty_score":0.4499931,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01649650550127715,"score_gpt":0.2766717539841567,"score_spread":0.2601752484828795,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}