{"id":"W2093533627","doi":"10.1101/gr.164327.113","title":"A unified model for yeast transcript definition","year":2013,"lang":"en","type":"article","venue":"Genome Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Computational biology; Transcription (linguistics); Genetics; Terminator (solar); Promoter; Genome; Gene; General transcription factor; Transcription factor; Enhancer; Bacterial transcription; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001751905,0.0008360325,0.001066053,0.00104349,0.0007547382,0.002687991,0.002115159,0.001630928,0.004892978],"category_scores_gemma":[0.003997217,0.0005717136,0.00252499,0.001183409,0.001501872,0.002827556,0.001698299,0.0014319,0.001756243],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002465377,"about_ca_system_score_gemma":0.001785901,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00633958,"about_ca_topic_score_gemma":0.005858303,"domain_scores_codex":[0.9989435,0.0003175247,0.00008368944,0.0003071321,0.0002389098,0.000109233],"domain_scores_gemma":[0.9982831,0.001017962,0.0001514401,0.0002305707,0.0002323476,0.00008449845],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00007785327,0.00002433564,0.0007200961,0.00007790102,0.00002889499,0.0001610091,0.0002692258,0.3251475,0.002183502,0.6541714,0.00213506,0.01500328],"study_design_scores_gemma":[0.00001773193,0.00001636288,0.0001022667,0.00001344606,0.000009635675,0.00005125056,0.00002041752,0.7805967,0.000402526,0.2147959,0.003956476,0.00001726258],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.008740677,0.0002870301,0.98448,0.0005815825,0.00005364973,0.00005300735,0.0007043054,0.0004553467,0.004644432],"genre_scores_gemma":[0.4149455,0.001205572,0.5593408,0.0005355502,0.0002187156,0.001210738,0.003648238,0.0005321072,0.01836275],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.00633958,"threshold_uncertainty_score":0.01788771,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08164563180562455,"score_gpt":0.3132777769791137,"score_spread":0.2316321451734891,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}