{"id":"W2093560200","doi":"10.1038/nbt923","title":"Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris","year":2003,"lang":"en","type":"article","venue":"Nature Biotechnology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":770,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Lawrence Livermore National Laboratory; Army Research Office; Biological and Environmental Research; Office of Science; Oak Ridge National Laboratory; Joint Genome Institute; Battelle; U.S. Department of Energy","keywords":"Rhodopseudomonas palustris; Biology; Genome; Gene; Bacteria; Rhodopseudomonas; Whole genome sequencing; Plasmid; Rhodospirillaceae; Response regulator; Genetics; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001560615,0.0001896444,0.0002470047,0.00004967611,0.00009486674,0.000006276112,0.0005113682,0.0008070866,0.00002781335],"category_scores_gemma":[0.000265771,0.0001400676,0.0001414613,0.0002113137,0.0004213084,5.100842e-7,0.0002344339,0.0003661789,0.000005001787],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000138148,"about_ca_system_score_gemma":0.00008083732,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001455889,"about_ca_topic_score_gemma":0.00002189833,"domain_scores_codex":[0.9989058,0.00008768549,0.0002273356,0.0003830681,0.0001124247,0.0002836224],"domain_scores_gemma":[0.9989654,0.00001995815,0.0001420409,0.000744407,0.00009219814,0.00003595597],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001765962,0.0000253029,0.0004181419,0.000008022753,0.00007905338,8.600724e-7,0.00001804692,0.00001011071,0.996235,0.002726346,0.0001537079,0.0003077441],"study_design_scores_gemma":[0.0002236011,0.00009108853,0.003968242,0.000003322277,0.00002870627,0.00003198093,0.00003407928,0.000003568248,0.5922916,0.0003576416,0.4028386,0.0001275376],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921333,0.004673493,0.00009948265,0.001072333,0.0005489416,0.0002739814,0.0002914227,0.00001005791,0.0008969927],"genre_scores_gemma":[0.9974093,0.0005133504,0.001441476,0.0003802604,0.00004335803,0.00001499584,0.00001768945,0.00001894239,0.0001605813],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4039434,"threshold_uncertainty_score":0.6224991,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01094337840827522,"score_gpt":0.2269606478228329,"score_spread":0.2160172694145577,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}