{"id":"W2093560200","doi":"10.1038/nbt923","title":"Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris","year":2003,"lang":"en","type":"article","venue":"Nature Biotechnology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":770,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Lawrence Livermore National Laboratory; Army Research Office; Biological and Environmental Research; Office of Science; Oak Ridge National Laboratory; Joint Genome Institute; Battelle; U.S. Department of Energy","keywords":"Rhodopseudomonas palustris; Biology; Genome; Gene; Bacteria; Rhodopseudomonas; Whole genome sequencing; Plasmid; Rhodospirillaceae; Response regulator; Genetics; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003380909,0.00128653,0.001082439,0.001385594,0.0007277938,0.0007646552,0.0006290798,0.0008402398,0.0029743],"category_scores_gemma":[0.0006437915,0.0004394957,0.0009265949,0.002745108,0.0002221478,0.000500972,0.0004661613,0.001163108,0.00445927],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005920175,"about_ca_system_score_gemma":0.001811624,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01258682,"about_ca_topic_score_gemma":0.008871242,"domain_scores_codex":[0.9997405,0.00002406834,0.00002487004,0.00007789618,0.00009142864,0.00004118635],"domain_scores_gemma":[0.999532,0.00007110177,0.00008679198,0.00004762934,0.0001503225,0.0001121834],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001403237,0.0001942146,0.003999065,0.001935625,0.0001151158,0.0009040933,0.0004567715,0.0009798221,0.9413308,0.0005414636,0.0072674,0.04087237],"study_design_scores_gemma":[0.0008374327,0.001459981,0.3478994,0.0007074982,0.001465655,0.004591266,0.000985803,0.00407143,0.2339681,0.002527148,0.4011058,0.0003805095],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.3925607,0.01653025,0.03058276,0.001344698,0.0004537089,0.0006438537,0.5440475,0.00193633,0.01190033],"genre_scores_gemma":[0.1207869,0.005750622,0.03140265,0.0002782117,0.00008405613,0.0002766158,0.8337912,0.0004869969,0.007142775],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01258682,"threshold_uncertainty_score":0.0250271,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01094337840827522,"score_gpt":0.2269606478228329,"score_spread":0.2160172694145577,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}