{"id":"W2093706611","doi":"10.1186/1471-2199-10-18","title":"Discriminating nucleosomes containing histone H2A.Z or H2A based on genetic and epigenetic information","year":2009,"lang":"en","type":"article","venue":"BMC Molecular Biology","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Nucleosome; Biology; Genetics; Histone; Epigenetics; Epigenomics; Histone code; Chromatin; Histone methylation; Histone H2A; Promoter; DNA methylation; DNA; Computational biology; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001363123,0.0002357713,0.0002135024,0.00009772721,0.0001095621,0.00003690779,0.0001819637,0.000216132,0.00001562446],"category_scores_gemma":[0.0001717876,0.0002079254,0.00007589968,0.00007115836,0.00009494932,0.00000451395,0.00006989675,0.00009006337,0.000007426497],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002690092,"about_ca_system_score_gemma":0.00009711668,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000105456,"about_ca_topic_score_gemma":0.00002080514,"domain_scores_codex":[0.998825,0.0001004888,0.0003351335,0.0003377773,0.00008167566,0.0003199116],"domain_scores_gemma":[0.999293,0.0000249747,0.0001584872,0.0003656751,0.00006016318,0.00009766518],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005304184,0.0001259941,0.004304126,0.00007344243,0.0000449976,0.00001591057,0.0001655083,0.003919172,0.9257573,0.002943815,0.00008998274,0.06202926],"study_design_scores_gemma":[0.0173051,0.03362512,0.250503,0.0003268635,0.0004434995,0.0004495426,0.001355627,0.2550912,0.3948144,0.008695684,0.03232351,0.005066478],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9035611,0.0004295753,0.09456439,0.0001748645,0.00008761373,0.0002433571,0.00002006902,0.00002072178,0.0008983512],"genre_scores_gemma":[0.9761971,0.00006795008,0.02149899,0.001833646,0.00005437661,0.00001222524,0.0002815287,0.00001893456,0.00003524191],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.530943,"threshold_uncertainty_score":0.847895,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007582684044451663,"score_gpt":0.260807951560554,"score_spread":0.2532252675161023,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}