{"id":"W2093996236","doi":"10.1239/jap/1346955342","title":"A Branching Process for Virus Survival","year":2012,"lang":"en","type":"article","venue":"Journal of Applied Probability","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Toronto Metropolitan University","funders":"National Science Foundation","keywords":"Viral quasispecies; Branching process; Population; Mathematics; Replicate; Mutation; Virus; Statistical physics; Biology; Evolutionary biology; Statistics; Genetics; Demography; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009154613,0.00008967122,0.0001473123,0.0000195809,0.00005132081,0.000009286899,0.0001347139,0.00009147673,0.000008526465],"category_scores_gemma":[0.0001004209,0.00007572569,0.0001083503,0.00004605753,0.00004602487,0.00000469315,0.00002679184,0.00009048443,0.000001165339],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001940972,"about_ca_system_score_gemma":0.00008887544,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":4.667689e-7,"about_ca_topic_score_gemma":0.000008099213,"domain_scores_codex":[0.9992471,0.00002162667,0.0002950181,0.0001065028,0.0001280425,0.0002016582],"domain_scores_gemma":[0.9993699,0.00001620475,0.0001990591,0.0001461121,0.0001584622,0.000110256],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003646557,0.001630291,0.03506088,0.0005271444,0.0003126704,4.245084e-7,0.001135595,0.008093188,0.9211223,0.01276188,0.001712972,0.01399612],"study_design_scores_gemma":[0.01083585,0.002446219,0.07765987,0.00005640967,0.0003901074,0.0001918867,0.001243659,0.002192712,0.5851641,0.10871,0.2093059,0.001803236],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9676358,0.0001926394,0.03003719,0.00008523672,0.000265716,0.0002415104,0.000009817794,0.000003940916,0.00152814],"genre_scores_gemma":[0.9935238,0.00001186291,0.00581538,0.0001005346,0.0004882964,0.00001196786,0.000008502161,0.00001072991,0.00002893397],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3359582,"threshold_uncertainty_score":0.3088004,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01988484840065982,"score_gpt":0.2916525895504138,"score_spread":0.2717677411497539,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}