{"id":"W2094167514","doi":"10.1089/aid.2007.0120","title":"R5 and X4 HIV Viruses Differentially Modulate Host Gene Expression in Resting CD4 <sup>+</sup> T Cells","year":2008,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Tropism; Biology; T-cell receptor; Transcriptome; Tissue tropism; Phenotype; Actin; T cell; Gene expression; Gene; Signal transduction; Cell biology; Virology; Virus; Immunology; Genetics; Immune system","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006504912,0.0002946828,0.000438596,0.000683801,0.001289568,0.00009993992,0.0003003375,0.0002544536,0.0004414015],"category_scores_gemma":[0.0002371323,0.0002384983,0.00005972579,0.0002770617,0.001299653,0.0002426173,0.0005362881,0.0008781484,0.0003744682],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008752994,"about_ca_system_score_gemma":0.0001171152,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009928746,"about_ca_topic_score_gemma":0.0001479278,"domain_scores_codex":[0.9966804,0.0007286363,0.0003884033,0.0007220616,0.000252875,0.001227662],"domain_scores_gemma":[0.9986237,0.0005217109,0.00005947949,0.000448891,0.0001453944,0.0002007854],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003809506,0.0003251144,0.3436106,0.00004493945,0.00007860469,0.0002528794,0.0009739302,0.000004298927,0.6513098,0.0001602761,0.002118157,0.0007405321],"study_design_scores_gemma":[0.005301552,0.003076074,0.4104538,0.0002293217,0.00001706892,0.0001059817,0.0005227788,0.000005972256,0.573204,0.0006407307,0.005980886,0.0004618484],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948544,0.003560538,0.00001908706,0.00004242659,0.00003211859,0.0004648461,0.000137423,0.00006037113,0.0008287853],"genre_scores_gemma":[0.9935898,0.001936404,0.0002660465,0.00003812218,0.00006306046,0.0000739016,0.00009981648,0.00003757903,0.003895234],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07810581,"threshold_uncertainty_score":0.9918445,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06801710929872773,"score_gpt":0.3229905770399612,"score_spread":0.2549734677412335,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}