{"id":"W2094453322","doi":"10.1371/journal.pbio.0000074","title":"Transcriptome Analysis of Mouse Stem Cells and Early Embryos","year":2003,"lang":"en","type":"article","venue":"PLoS Biology","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":189,"is_retracted":false,"has_abstract":true,"ca_institutions":"Mount Sinai Hospital","funders":"National Cancer Institute; National Institute on Aging; National Institutes of Health","keywords":"Biology; Embryonic stem cell; Transcriptome; Stem cell; Induced pluripotent stem cell; Embryo; Cell biology; Gene; Genetics; Computational biology; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001785367,0.0001261948,0.0003031889,0.0001890837,0.00003309814,0.000007267645,0.0001581987,0.0001953511,0.0000356206],"category_scores_gemma":[0.00001887847,0.0001118873,0.0001221327,0.0002547789,0.0001586478,0.000002094167,0.00004441478,0.00007802546,0.000006576438],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006219747,"about_ca_system_score_gemma":0.00002992708,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002465036,"about_ca_topic_score_gemma":0.00001698148,"domain_scores_codex":[0.9988457,0.000204255,0.000225321,0.0003677177,0.0000829639,0.0002740245],"domain_scores_gemma":[0.9994244,0.000024143,0.00006343291,0.0003208939,0.00007539288,0.00009172671],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003810026,0.00007981219,0.02387368,0.00001888331,0.0007982877,0.000001376666,0.00004063739,0.00001173222,0.9747295,0.0002263041,0.00005461706,0.0001270719],"study_design_scores_gemma":[0.0003321229,0.0003196181,0.001796056,0.000002032212,0.0001930888,0.000001687466,0.00003461098,0.00004476209,0.9930069,0.00001305854,0.004133735,0.0001223695],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977151,0.001003562,0.0003194291,0.00002213726,0.00003352434,0.0001485344,0.00008196521,0.000007097789,0.0006686941],"genre_scores_gemma":[0.9973307,0.0003966696,0.0001722715,0.00004069028,0.00001370969,0.00001306093,0.00003119027,0.00001310788,0.001988613],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02207762,"threshold_uncertainty_score":0.4562631,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0188373531241441,"score_gpt":0.2523750872245156,"score_spread":0.2335377341003715,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}