{"id":"W2095119492","doi":"10.1016/j.ymeth.2010.04.004","title":"Identification of HIV integration sites in infected host genomic DNA","year":2010,"lang":"en","type":"article","venue":"Methods","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Computational biology; Biology; Genome; Human immunodeficiency virus (HIV); Host (biology); Identification (biology); Human genome; Genetics; Gene; Virology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007348384,0.00006013237,0.0001209379,0.0001457224,0.00003257285,0.000006330486,0.00008378063,0.0001109613,0.0004107621],"category_scores_gemma":[0.0004160489,0.00004895842,0.00003184906,0.0001318878,0.00008494295,0.00004387824,0.00002558544,0.0002039465,0.0004187563],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001962805,"about_ca_system_score_gemma":0.00003178352,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006971996,"about_ca_topic_score_gemma":0.0002238389,"domain_scores_codex":[0.9991084,0.0004215256,0.0002049097,0.0001241109,0.0000142761,0.0001268046],"domain_scores_gemma":[0.9994839,0.0002110277,0.00006466139,0.0001824883,0.0000477496,0.00001013093],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000270217,0.00009025936,0.02056579,0.000004131748,0.00002245805,5.688401e-7,0.0002737284,2.963626e-7,0.9501421,0.0003448553,0.0000962117,0.02843255],"study_design_scores_gemma":[0.0003427029,0.00003210099,0.2855731,0.000002522039,0.000005940475,0.000002949252,0.0000296023,0.00001386361,0.7125301,0.00016001,0.001275832,0.00003130478],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9913656,0.0001917938,0.007567458,0.00008912214,0.0001677948,0.0001586187,0.00002693434,0.00001677968,0.0004158924],"genre_scores_gemma":[0.9915163,0.0000172461,0.007385249,0.000005726937,0.0000078692,0.00002582574,0.000210236,0.000004971534,0.000826595],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2650073,"threshold_uncertainty_score":0.5382404,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02448729229246172,"score_gpt":0.3651747751151203,"score_spread":0.3406874828226586,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}