{"id":"W2095324004","doi":"10.1021/bi802195d","title":"Specificity of <i>Campylobacter jejuni</i> Adhesin PEB3 for Phosphates and Structural Differences among Its Ligand Complexes,","year":2009,"lang":"en","type":"article","venue":"Biochemistry","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute for Biological Sciences; McGill University; Structural Genomics Consortium; Biotechnology Research Institute","funders":"Basic Energy Sciences; Canadian Institutes of Health Research; Office of Science; University of Alberta; Emory University; U.S. Department of Energy","keywords":"Campylobacter jejuni; Cocrystal; Chemistry; Ligand (biochemistry); Mutant; Biochemistry; Wild type; Binding site; Stereochemistry; Molecule; Biology; Bacteria; Receptor","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001135734,0.0001870464,0.0003293518,0.000005148577,0.0001079431,0.00003062036,0.0002147675,0.0001657039,0.0001292628],"category_scores_gemma":[0.0000783178,0.00007942288,0.00009510721,0.00007404087,0.0001507609,0.00005645526,0.00003730345,0.00007568017,0.00000120727],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001002593,"about_ca_system_score_gemma":0.000005507708,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004565233,"about_ca_topic_score_gemma":0.00002351337,"domain_scores_codex":[0.9989773,0.00002615224,0.0002813857,0.0003419176,0.00009245042,0.0002807889],"domain_scores_gemma":[0.9993502,0.0002397498,0.0001599898,0.00006670009,0.00007277336,0.0001105416],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005147623,0.00003031087,0.1779267,0.00001949352,0.000009715255,5.973652e-7,0.00002045026,8.636057e-8,0.8171707,0.00006440245,0.0004318583,0.004274112],"study_design_scores_gemma":[0.00010507,0.0001322742,0.5697325,0.00001747834,0.000009804605,0.0000056645,0.00006537259,0.00002479315,0.4288214,0.0007776435,0.0001837692,0.0001243143],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977989,0.001130422,0.000001161664,0.0003682701,0.00006129613,0.0001511651,0.0001565838,0.00003268938,0.0002994965],"genre_scores_gemma":[0.9991586,0.00008575877,0.00008312933,0.0001568047,0.00023417,0.000003432791,0.0001012031,8.833243e-7,0.0001760723],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3918057,"threshold_uncertainty_score":0.3238771,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02234443608180629,"score_gpt":0.2328668553635883,"score_spread":0.2105224192817821,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}