{"id":"W2095552780","doi":"10.1371/journal.pone.0065670","title":"Comparative Genomic Analyses of Streptococcus pseudopneumoniae Provide Insight into Virulence and Commensalism Dynamics","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Public Health Ontario; University of Toronto","funders":"","keywords":"Pneumolysin; Biology; Streptococcus pneumoniae; Microbiology; Virulence; Antibiotic resistance; Comparative genomics; Commensalism; Genetics; Streptococcus mitis; Genome; Gene; Antibiotics; Genomics; Streptococcus; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002289671,0.0004549688,0.0005522807,0.001740671,0.0003505843,0.0005451431,0.0002217709,0.0004418517,0.001018911],"category_scores_gemma":[0.0004922189,0.0001904195,0.0006985921,0.002330784,0.0002216739,0.0003656552,0.0004309659,0.0005504563,0.0005271572],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000335244,"about_ca_system_score_gemma":0.0004206937,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001831129,"about_ca_topic_score_gemma":0.002078148,"domain_scores_codex":[0.9997095,0.00003302821,0.00001870344,0.0001007988,0.00008094974,0.00005696748],"domain_scores_gemma":[0.9997613,0.00005610184,0.00008029622,0.00001926982,0.00004711426,0.00003598436],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003968216,0.00008930799,0.0186247,0.0008623675,0.0001425482,0.0005490307,0.0004930318,0.0007700141,0.9451553,0.0008716204,0.0005524243,0.03149283],"study_design_scores_gemma":[0.00003026061,0.0008717433,0.8283865,0.0002231926,0.0004316875,0.002492138,0.001696319,0.006897929,0.1134307,0.002662471,0.04278044,0.00009654183],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9510922,0.01100086,0.014468,0.0003598043,0.00006898949,0.00007432685,0.0186178,0.0002531108,0.004064837],"genre_scores_gemma":[0.9389447,0.006934342,0.02280046,0.0002563948,0.00005831056,0.0001150086,0.02892895,0.0001021694,0.00185964],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001831129,"threshold_uncertainty_score":0.00364089,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0796121596240085,"score_gpt":0.3149026455349325,"score_spread":0.235290485910924,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}