{"id":"W2095699986","doi":"10.1126/science.1103773","title":"The Genome of the Basidiomycetous Yeast and Human Pathogen <i>Cryptococcus neoformans</i>","year":2005,"lang":"en","type":"article","venue":"Science","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":726,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Genome British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute","keywords":"Cryptococcus neoformans; Biology; Genome; Transposable element; Gene; Genetics; Transcriptome; Virulence; Whole genome sequencing; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002695333,0.00005712647,0.00004668141,0.0000098014,0.0005984516,0.00002394533,0.0003303232,0.00002000668,0.000003560881],"category_scores_gemma":[0.00002393745,0.00002808826,0.00002845336,0.0001042499,0.0007704763,0.000003596187,0.0002964449,0.00003374286,0.000003066307],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005399123,"about_ca_system_score_gemma":0.00004741632,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005037331,"about_ca_topic_score_gemma":0.00004793709,"domain_scores_codex":[0.999446,0.00001124429,0.00008808602,0.0001459527,0.0001295571,0.000179176],"domain_scores_gemma":[0.9996158,0.000003296678,0.00004431462,0.0002546156,0.00005061677,0.00003133896],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000002733093,0.00000663945,0.002716636,0.000001997443,0.000003702253,9.755774e-8,0.00007165409,0.000009167329,0.9942361,0.0004282503,0.0001327758,0.002390225],"study_design_scores_gemma":[0.0002284818,0.000126089,0.2282048,0.000008712813,0.00001121873,0.00001949131,0.0002330039,0.00001944481,0.2156895,0.0001143007,0.5552006,0.0001444217],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938323,0.001462602,0.00001905689,0.0004126623,0.0000810963,0.0001271294,0.00001516352,0.000002871075,0.004047122],"genre_scores_gemma":[0.9989225,0.0001470917,0.00006931594,0.0001283266,0.0001083208,0.000005763785,8.648257e-7,0.000003196135,0.0006146668],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7785466,"threshold_uncertainty_score":0.4602867,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005051440907401464,"score_gpt":0.2258816832969186,"score_spread":0.2208302423895172,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}