{"id":"W2095724872","doi":"10.1093/nar/gkg500","title":"Multiple sequence alignment with the Clustal series of programs","year":2003,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4899,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Centre National de la Recherche Scientifique","keywords":"Biology; Multiple sequence alignment; Software portability; Phylogenetic tree; Sequence alignment; Web server; Indel; Robustness (evolution); Bioinformatics; Set (abstract data type); Computational biology; Computer science; The Internet; Genetics; World Wide Web; Peptide sequence; Programming language","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005144343,0.004530029,0.007492386,0.01338899,0.004275831,0.003729172,0.006275707,0.00244018,0.0304522],"category_scores_gemma":[0.007502723,0.002153987,0.004230316,0.01461932,0.001369321,0.003363007,0.003963791,0.007943628,0.03573067],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001331932,"about_ca_system_score_gemma":0.002004177,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001491194,"about_ca_topic_score_gemma":0.002338744,"domain_scores_codex":[0.9948394,0.001505311,0.00103205,0.00143838,0.0008807632,0.0003041013],"domain_scores_gemma":[0.997286,0.0007125245,0.0005483697,0.0006602941,0.0005974443,0.0001954072],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004910969,0.001728956,0.003707896,0.01576981,0.002895316,0.003245586,0.002472805,0.009460252,0.3425187,0.02844359,0.2148216,0.3700245],"study_design_scores_gemma":[0.0004674257,0.001560363,0.007013293,0.00110157,0.001152319,0.003446822,0.0005354457,0.03460282,0.08813611,0.02113231,0.8402439,0.0006076134],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.02810721,0.01120302,0.8412915,0.001168164,0.001970381,0.003859114,0.05108089,0.03855605,0.02276384],"genre_scores_gemma":[0.01749832,0.006621959,0.8893121,0.0002722096,0.0003057762,0.003419202,0.06835673,0.0058323,0.008381401],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.0304522,"threshold_uncertainty_score":0.1018727,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04682860158214395,"score_gpt":0.3062734391288656,"score_spread":0.2594448375467216,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}