{"id":"W2096018607","doi":"10.1128/aem.00985-08","title":"Rapid Determination of<i>Escherichia coli</i>O157:H7 Lineage Types and Molecular Subtypes by Using Comparative Genomic Fingerprinting","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge; Public Health Agency of Canada","funders":"Public Health Agency; Canadian Food Inspection Agency","keywords":"Biology; Typing; Dendrogram; Escherichia coli; Genetics; Locus (genetics); Pulsed-field gel electrophoresis; DNA profiling; Lineage (genetic); Computational biology; Gene; Genotype; Genetic diversity; Population; DNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003508854,0.0002806307,0.0002590271,0.0008005477,0.000165921,0.000411757,0.000239142,0.0003480416,0.0004448809],"category_scores_gemma":[0.0008604669,0.0001423782,0.000208722,0.0003921227,0.0002048891,0.0003001149,0.0002083417,0.0003076375,0.000209299],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001292142,"about_ca_system_score_gemma":0.0001094255,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009920789,"about_ca_topic_score_gemma":0.0009990594,"domain_scores_codex":[0.9997132,0.00004612179,0.00001876862,0.00009406018,0.0000763393,0.00005147697],"domain_scores_gemma":[0.9995134,0.0001811872,0.0001347578,0.00003960515,0.00008639949,0.00004465805],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001235964,0.00003078637,0.02717184,0.00006651392,0.00001541392,0.00004586688,0.000139746,0.0001319022,0.9587099,0.0000629283,0.00002572877,0.01347581],"study_design_scores_gemma":[0.0000165328,0.0009022412,0.3386554,0.00004852633,0.000110606,0.001799416,0.0007628722,0.004030878,0.6507981,0.0003325497,0.002501164,0.00004165214],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9874868,0.0003609664,0.01134981,0.00002386602,0.00000431534,0.00002352112,0.0002549225,0.00003966119,0.0004560519],"genre_scores_gemma":[0.9710355,0.000313632,0.02747369,0.0000506354,0.000007962751,0.0000326956,0.0007992888,0.00001688635,0.0002696875],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009920789,"threshold_uncertainty_score":0.001972556,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0115430508921318,"score_gpt":0.2233755160229233,"score_spread":0.2118324651307915,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}